Factsheet for Os03t0390600-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 18203134
plastid: 21433289
nucleus: 23303719
plastid: 27992503

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78406	Canola	nucleus, plastid	100.0	100.0
KRH31323	Soybean	nucleus	100.0	100.0
TraesCS7D01G061500.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS7B01G062700.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS4A01G423800.1	Wheat	nucleus, plastid	100.0	100.0
Solyc05g051500.2.1	Tomato	nucleus, plastid	100.0	100.0
PGSC0003DMT400041662	Potato	nucleus, plastid	100.0	100.0
GSMUA_Achr9P14950_001	Banana	golgi, plasma membrane	100.0	18.23
Os05t0451900-01	Rice	cytosol	26.47	8.57
Os12t0190100-01	Rice	golgi, mitochondrion, plasma membrane	29.41	8.08
Os06t0219400-00	Rice	mitochondrion	19.12	7.24
Os03t0169000-01	Rice	endoplasmic reticulum, golgi, vacuole	24.26	7.08
Os06t0284200-02	Rice	mitochondrion	25.74	6.89
Os02t0726500-01	Rice	golgi, mitochondrion, peroxisome, plastid	25.0	6.67
Os03t0328100-01	Rice	mitochondrion	23.53	6.43
Os04t0563000-01	Rice	endoplasmic reticulum, golgi	22.79	5.62
Os01t0168600-01	Rice	mitochondrion	11.76	5.48
Os04t0551300-01	Rice	cytosol, golgi, mitochondrion, plastid	12.5	5.47
Os09t0442900-01	Rice	cytosol, plasma membrane, plastid	24.26	5.17
Os08t0554050-01	Rice	golgi	22.06	5.03
Os01t0851100-02	Rice	plastid	14.71	4.67
Os09t0548100-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.4	EntrezGene:4325069	EntrezGene:4333019	EntrezGene:4338913	EntrezGene:4340006
EntrezGene:4340203	EntrezGene:4349820	EntrezGene:9269345	EntrezGene:9271591	UniProt:A3AUC6	ProteinID:AAR06361.1
ProteinID:ABF96358.1	ProteinID:ABF96359.1	ProteinID:ADC54261.1	EMBL:AF093633	EMBL:AF467728	EMBL:AK063199
EMBL:AK104901	EMBL:AK120955	EMBL:AP014960	EMBL:AP014962	EMBL:AY525328	ProteinID:BAA84794.1
ProteinID:BAF12190.1	ProteinID:BAF14856.1	ProteinID:BAF18607.1	ProteinID:BAH93339.1	ProteinID:BAH93341.1	ProteinID:BAS84518.1
ProteinID:EAZ30915.1	ProteinID:EAZ35710.1	ProteinID:EEE51672.1	ProteinID:EEE59182.1	EMBL:EF434405	EMBL:EU267989
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0010369	GO:GO:0016043	GO:GO:0031492
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H3/CENP-A	InterPro:IPR009072	EMBL:KF214532
EnsemblPlantsGene:Os03g0390600	EnsemblPlants:Os03t0390600-02	PFAM:PF00125	PRINTS:PR00622	ScanProsite:PS00322	ScanProsite:PS00959
PANTHER:PTHR11426	PANTHER:PTHR11426:SF163	UniProt:Q0JCT1	SMART:SM00428	SUPFAM:SSF47113	UniParc:UPI0000000067
RefSeq:XP_015615109.1	RefSeq:XP_015630537.1	RefSeq:XP_015639714.1	RefSeq:XP_015641515.1	RefSeq:XP_015642925.1	RefSeq:XP_015642926.1
RefSeq:XP_015642927.1	RefSeq:XP_015643543.1	:	:	:	:

Description

H3Similar to Histone H3 (Fragment). (Os03t0390600-01);Similar to Histone H3.3. (Os03t0390600-02);Non-protein coding transcript. (Os03t0390600-03)

Coordinates

chr3:+:15645609..15648145

Molecular Weight (calculated)

15407.0 Da

IEP (calculated)

11.739

GRAVY (calculated)

-0.602

Length

136 amino acids

Sequence
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Best Arabidopsis Sequence Match ( AT4G40040.1 )
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Arabidopsis Description

HTR8Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.