Factsheet for PGSC0003DMT400041662

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78406	Canola	nucleus, plastid	100.0	100.0
KRH31323	Soybean	nucleus	100.0	100.0
Os03t0390600-02	Rice	nucleus	100.0	100.0
TraesCS7D01G061500.1	Wheat	nucleus, plastid	100.0	100.0
PGSC0003DMT400009656	Potato	nucleus, plastid	100.0	100.0
TraesCS7B01G062700.1	Wheat	nucleus, plastid	100.0	100.0
TraesCS4A01G423800.1	Wheat	nucleus, plastid	100.0	100.0
Solyc05g051500.2.1	Tomato	nucleus, plastid	100.0	100.0
PGSC0003DMT400079216	Potato	nucleus, plastid	100.0	100.0
PGSC0003DMT400043254	Potato	nucleus, plastid	100.0	100.0
GSMUA_Achr9P14950_001	Banana	golgi, plasma membrane	100.0	18.23
PGSC0003DMT400010442	Potato	golgi	28.68	7.89
PGSC0003DMT400006095	Potato	cytosol	27.94	7.6
PGSC0003DMT400045812	Potato	cytosol	18.38	7.46
PGSC0003DMT400063300	Potato	cytosol	26.47	7.21
PGSC0003DMT400072871	Potato	cytosol, extracellular	20.59	7.2
PGSC0003DMT400079224	Potato	endoplasmic reticulum, golgi, plasma membrane	26.47	6.78
PGSC0003DMT400036338	Potato	cytosol, golgi, mitochondrion	25.0	6.36
PGSC0003DMT400028801	Potato	plastid	26.47	5.62
PGSC0003DMT400030987	Potato	mitochondrion	22.06	5.56
PGSC0003DMT400011606	Potato	golgi	21.32	5.44
PGSC0003DMT400075381	Potato	golgi	22.79	5.23
PGSC0003DMT400048017	Potato	golgi	20.59	5.14
PGSC0003DMT400052382	Potato	plastid	23.53	4.98
PGSC0003DMT400043331	Potato	extracellular	19.12	4.8
PGSC0003DMT400012157	Potato	golgi, plastid, vacuole	19.85	4.58

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102584902	EntrezGene:102586673	EntrezGene:102587619	EntrezGene:102593235	MapMan:12.1.4
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005730
GO:GO:0030875	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H3/CENP-A	InterPro:IPR009072
UniProt:M1BEC3	PFAM:PF00125	EnsemblPlantsGene:PGSC0003DMG400016151	PGSC:PGSC0003DMG400016151	EnsemblPlants:PGSC0003DMT400041662	PRINTS:PR00622
ScanProsite:PS00322	ScanProsite:PS00959	PANTHER:PTHR11426	PANTHER:PTHR11426:SF163	SMART:SM00428	SUPFAM:SSF47113
UniParc:UPI0000000067	RefSeq:XP_006342014.1	RefSeq:XP_006363289.1	RefSeq:XP_006366221.1	RefSeq:XP_015166737.1	:

Description

Histone H3.3 [Source:PGSC_GENE;Acc:PGSC0003DMG400016151]

Coordinates

chr11:+:2670024..2672046

Molecular Weight (calculated)

15407.0 Da

IEP (calculated)

11.739

GRAVY (calculated)

-0.602

Length

136 amino acids

Sequence
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Best Arabidopsis Sequence Match ( AT4G40040.1 )
(BLAST)

001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA

Arabidopsis Description

HTR8Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.