Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G077570.1 | Barley | nucleus | 40.0 | 45.16 |
| TraesCS2D01G310500.1 | Wheat | nucleus | 38.29 | 44.67 |
| GSMUA_Achr9P22830_001 | Banana | cytosol, mitochondrion, nucleus | 30.29 | 44.17 |
| TraesCS4B01G345000.1 | Wheat | nucleus | 32.57 | 43.85 |
| GSMUA_Achr4P11520_001 | Banana | nucleus | 25.14 | 43.56 |
| TraesCS2A01G312200.1 | Wheat | nucleus | 37.71 | 43.42 |
| TraesCS4D01G340000.1 | Wheat | nucleus | 32.0 | 43.41 |
| TraesCS2B01G329000.1 | Wheat | nucleus | 37.71 | 42.86 |
| Zm00001d025485_P001 | Maize | nucleus | 39.43 | 42.59 |
| TraesCS5A01G542800.1 | Wheat | nucleus | 29.14 | 42.15 |
| Zm00001d003573_P001 | Maize | nucleus | 41.14 | 41.38 |
| KXG26384 | Sorghum | nucleus | 41.71 | 40.78 |
| Os09t0431750-00 | Rice | nucleus | 28.57 | 37.04 |
| Os09t0430600-00 | Rice | nucleus | 31.43 | 36.18 |
| GSMUA_Achr9P19640_001 | Banana | nucleus | 25.14 | 34.38 |
| GSMUA_Achr2P04940_001 | Banana | nucleus | 25.71 | 34.09 |
| Os09t0431900-00 | Rice | nucleus | 27.43 | 28.24 |
| Os09t0429766-00 | Rice | cytosol | 17.71 | 27.68 |
Protein Annotations
| EMBL:GQ999998 | EnsemblPlants:Os04t0444100-00 | EnsemblPlantsGene:Os04g0444100 | EntrezGene:9268617 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF311 | PFscan:PS50157 |
| ProteinID:BAH92688.1 | ProteinID:BAS89374.1 | ProteinID:CAE02428.1 | ProteinID:EAZ30857.1 | RefSeq:XP_015635414.1 | ScanProsite:PS00028 |
| SEG:seg | UniParc:UPI00001B1323 | UniProt:Q7XRM1 | MapMan:15.5.15 | : | : |
Description
Hypothetical conserved gene. (Os04t0444100-00)
Coordinates
chr4:+:22143825..22144352
Molecular Weight (calculated)
17469.5 Da
IEP (calculated)
8.516
GRAVY (calculated)
-0.203
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFGMVEDAA AAAGEEGLTL SLSLQPSPPR FQALFSCCYC PRKFRSSQAL GGHQNAHKLQ RNLARRGREA AASLAAAAAA AAAAAASSGD QQQQGRTTAA
101: AAAVLAGGES APPAAARAAA DLDGAGVWGG AGMRGRPAHH HRLMQGGYSS GGSSAAGGRG NGELADEMID LSLKL
101: AAAVLAGGES APPAAARAAA DLDGAGVWGG AGMRGRPAHH HRLMQGGYSS GGSSAAGGRG NGELADEMID LSLKL
001: MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
Arabidopsis Description
ZFP1At1g80730 [Source:UniProtKB/TrEMBL;Acc:Q0V814]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.