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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • cytosol 4
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:cytosol
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G409200.1 Wheat cytosol 70.26 72.77
TraesCS3D01G369600.1 Wheat cytosol 69.83 72.32
TraesCS3A01G376700.1 Wheat cytosol 69.4 71.56
Zm00001d036951_P001 Maize cytosol 67.67 69.78
EER89978 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 67.67 68.86
Os03t0785900-01 Rice cytosol 64.22 64.5
GSMUA_Achr9P26030_001 Banana cytosol 57.76 59.56
GSMUA_Achr9P26040_001 Banana cytosol 56.9 59.19
GSMUA_Achr10P... Banana cytosol 54.74 56.95
Os09t0367700-01 Rice cytosol 56.9 56.65
GSMUA_Achr9P26050_001 Banana cytosol 52.16 55.25
VIT_04s0079g00360.t01 Wine grape cytosol 50.43 53.18
Solyc02g081240.1.1 Tomato cytosol 46.55 48.65
PGSC0003DMT400094585 Potato cytosol 46.12 48.42
Os03t0643700-01 Rice cytosol 48.28 48.28
GSMUA_Achr9P26020_001 Banana cytosol 47.41 48.03
KRH17272 Soybean cytosol 43.53 45.7
KRH72918 Soybean cytosol 43.53 45.7
HORVU3Hr1G083520.1 Barley cytosol 50.0 45.67
Os10t0530900-01 Rice extracellular, plasma membrane 43.1 42.37
Os10t0528300-01 Rice cytosol 43.53 42.26
Os10t0531400-01 Rice plasma membrane 42.67 42.13
Os10t0528100-01 Rice plasma membrane 40.52 40.52
Os01t0692100-01 Rice mitochondrion 40.52 39.66
Os07t0152700-00 Rice cytosol 33.62 39.59
Os10t0528400-01 Rice plastid 39.66 39.48
Os10t0529800-00 Rice cytosol 40.09 39.24
Os07t0168300-01 Rice cytosol 39.66 39.15
Os10t0527800-01 Rice plasma membrane 39.22 39.06
Os10t0527400-01 Rice cytosol 40.09 38.91
Os10t0525500-01 Rice cytosol, plastid 24.14 38.89
Os01t0558100-01 Rice cytosol 40.95 38.0
Os10t0529400-01 Rice cytosol, mitochondrion 39.22 37.92
Os10t0528200-01 Rice mitochondrion, plasma membrane 38.36 37.87
Os10t0528900-01 Rice cytosol 37.5 37.66
Os10t0365200-00 Rice cytosol, plasma membrane 40.09 37.5
Os10t0529300-01 Rice cytosol, plasma membrane, plastid 39.22 37.45
Os10t0530600-01 Rice cytosol 38.79 37.04
Os10t0529700-01 Rice cytosol, mitochondrion, plasma membrane, plastid 37.07 36.75
Os10t0530400-01 Rice plasma membrane 37.07 35.68
Os10t0525800-00 Rice cytosol 33.19 35.32
Os10t0529500-01 Rice cytosol 36.21 35.29
Os10t0530200-01 Rice cytosol, extracellular 34.91 34.47
Os10t0527601-00 Rice cytosol 37.07 33.46
Os10t0481300-01 Rice cytosol 29.31 33.33
Os10t0525400-01 Rice cytosol, plastid 33.19 31.56
GSMUA_Achr9P26060_001 Banana cytosol 54.31 28.97
GSMUA_Achr9P26080_001 Banana cytosol 51.29 26.44
Os10t0368100-01 Rice cytosol 12.93 22.39
GSMUA_Achr9P26070_001 Banana cytosol 54.74 16.16
Protein Annotations
Gene3D:1.20.1050.10MapMan:18.8.1.4Gene3D:3.40.30.10EntrezGene:4343183EMBL:AK069604EMBL:AK105890
ProteinID:BAD31084.1ProteinID:BAF21509.1ProteinID:BAT01410.1ProteinID:EAZ39741.1GO:GO:0003674GO:GO:0003824
GO:GO:0004364GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006749GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009407
GO:GO:0009987GO:GO:0016740GO:GO:0019748InterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sfInterPro:Glutathione_S-Trfase_N
InterPro:IPR004045InterPro:IPR010987EnsemblPlantsGene:Os07g0468100EnsemblPlants:Os07t0468100-01PFAM:PF13410PFAM:PF13417
PFscan:PS50404PFscan:PS50405PANTHER:PTHR11260PANTHER:PTHR11260:SF234UniProt:Q69RL1SUPFAM:SSF47616
SUPFAM:SSF52833InterPro:Thioredoxin-like_sfUniParc:UPI00003FE828RefSeq:XP_015645264.1SEG:seg:
Description
TAU GLUTATHIONE S-TRANSFERASE 46Similar to Glutathione S-transferase GST 19 (EC 2.5.1.18). (Os07t0468100-01);Similar to Glutathione S-transferase GST 19 (EC 2.5.1.18). (Os07t0468100-02)
Coordinates
chr7:+:16674227..16675326
Molecular Weight (calculated)
25827.8 Da
IEP (calculated)
4.741
GRAVY (calculated)
-0.178
Length
232 amino acids
Sequence
(BLAST)
001: MAGGELVLLD FWASPFGQRC RIALAEKKLP YDYSEQELLG AKSDLLLRSN PIHAKVPVLL HGDGDGRAVC ESLAILEYLD DAFPDATPRL LPSAADDPYA
101: RARARFWADY VDKKVYPVGT RLWKVKGEEG VRAAAGARGE LVEALRTLDG ELGEKEFFGG EFGFVDVALV PMMPWVYSFA RYGGFSVEEE CPRVAAWARR
201: CMERDSVAGS LRSPEEIYDF IGLLRKHYGI DD
Best Arabidopsis Sequence Match ( AT1G17170.1 )
(BLAST)
001: MADEVILLDF WASMFGMRTR IALAEKRVKY DHREEDLWNK SSLLLEMNPV HKKIPVLIHN GKPVCESLIQ IEYIDETWPD NNPLLPSDPY KRAHAKFWAD
101: FIDKKVNVTA RRIWAVKGEE QEAAKELIEI LKTLESELGD KKYFGDETFG YVDIALIGFH SWFAVYEKFG NVSIESECSK LVAWAKRCLE RESVAKALPE
201: SEKVITFISE RRKKLGLE
Arabidopsis Description
GSTU24Glutathione S-transferase U24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHH6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.