Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g044340.2.1 | Tomato | cytosol | 14.17 | 90.51 |
| PGSC0003DMT400069483 | Potato | nucleus | 36.69 | 57.84 |
| PGSC0003DMT400064832 | Potato | nucleus | 17.14 | 25.42 |
| PGSC0003DMT400039948 | Potato | nucleus | 15.31 | 24.68 |
| PGSC0003DMT400043486 | Potato | cytosol | 14.51 | 24.38 |
Protein Annotations
| Gene3D:1.20.120.1750 | EntrezGene:102591171 | MapMan:19.2.2.1.5.4.1 | Gene3D:2.20.28.140 | Gene3D:3.30.40.10 | Gene3D:4.10.1060.10 |
| InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0046872 | InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR001876 | InterPro:IPR013083 | UniProt:M1B7L6 |
| PFAM:PF01485 | EnsemblPlantsGene:PGSC0003DMG400015058 | PGSC:PGSC0003DMG400015058 | EnsemblPlants:PGSC0003DMT400038933 | ScanProsite:PS01358 | PFscan:PS50089 |
| PFscan:PS50199 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF177 | SMART:SM00547 | SMART:SM00647 | SUPFAM:SSF57850 |
| UniParc:UPI000296D420 | RefSeq:XP_006340072.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RanBP2 | SEG:seg |
Description
OJ990528_30.1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015058]
Coordinates
chr1:+:16397198..16400306
Molecular Weight (calculated)
96825.6 Da
IEP (calculated)
6.192
GRAVY (calculated)
-0.532
Length
875 amino acids
Sequence
(BLAST)
(BLAST)
001: MENDVDMYDG TDVDSAGDDF YGDDGLINGG DSGSESSGDD IIDNDPDDLP RDKNYVVLSD DDIGRLMDDD ISKVSSVLSV SRTDASALLR RYNWSVNKVH
101: EEWFADESNV REAVGLKIQE KVVQFRDSKE VSCGICFEDY SSDGILASAC GHPFCVECWK GYISNSIADG PGCLNLRCAE PSCKVAVSQD MIDRLTSDDD
201: KKRYYGFLFR SYVEENRKIK WCPAPGCNFA VEFDIGSDNC EVICGCSNYF CWSCTEEAHS PVDCDMVVKW MEKNNAESEN TNWILAYTKA CPKCKRPIEK
301: NEGCMRMTCR DPCKYQFCWL CLNSWSVHGY NSCNKYTPGN EDDQKKEMAK QSIEKYTHYY ERWAANEKSR RKAVKDLKRM GEVNVKELSE LQSIPETQLK
401: FILEAWKQIV ECRRVLKWTY AYGFYLPDEE QTKRQFFEYL QGQAEAGLER LHLCAEKELE IYLNVEEGNS KTFDDFRIKL TSLTSVTRNY FENLVRALEN
501: GLEDVDSQGA LGNIATSSKT PAVSSKRTNS KKLLLGGDRM LVKERAEKIM TLMRTRNAKL PSTNSTASSK HVLVPGGGHT NRANNLGIRE DNTVRTSKSP
601: FEAWGVKFME SKETPVATRS FTLGPQFLQR AGVNSTTSSS NLQLAGGRKL MNIGAGSVKN LANAHVDGSN KLTLSKSPQV AGSNKLTLSK TPHVAGSDNL
701: TLSKTPHVAG VSSTTSSSNL LLAGGRKLMN IGAGSVKNLA SVHVDGSNNL TMSKTPHVTG SNNLTLSKTS HVAGSSSRID GGKKHRKTNT GASLIIKLDD
801: DDLGEASSAT GASLTQKFIA DFEGWACDSC TFLNADSTTT CLMCSEDAFG SWECEKCTFL NKMHASTCQI CEHRK
101: EEWFADESNV REAVGLKIQE KVVQFRDSKE VSCGICFEDY SSDGILASAC GHPFCVECWK GYISNSIADG PGCLNLRCAE PSCKVAVSQD MIDRLTSDDD
201: KKRYYGFLFR SYVEENRKIK WCPAPGCNFA VEFDIGSDNC EVICGCSNYF CWSCTEEAHS PVDCDMVVKW MEKNNAESEN TNWILAYTKA CPKCKRPIEK
301: NEGCMRMTCR DPCKYQFCWL CLNSWSVHGY NSCNKYTPGN EDDQKKEMAK QSIEKYTHYY ERWAANEKSR RKAVKDLKRM GEVNVKELSE LQSIPETQLK
401: FILEAWKQIV ECRRVLKWTY AYGFYLPDEE QTKRQFFEYL QGQAEAGLER LHLCAEKELE IYLNVEEGNS KTFDDFRIKL TSLTSVTRNY FENLVRALEN
501: GLEDVDSQGA LGNIATSSKT PAVSSKRTNS KKLLLGGDRM LVKERAEKIM TLMRTRNAKL PSTNSTASSK HVLVPGGGHT NRANNLGIRE DNTVRTSKSP
601: FEAWGVKFME SKETPVATRS FTLGPQFLQR AGVNSTTSSS NLQLAGGRKL MNIGAGSVKN LANAHVDGSN KLTLSKSPQV AGSNKLTLSK TPHVAGSDNL
701: TLSKTPHVAG VSSTTSSSNL LLAGGRKLMN IGAGSVKNLA SVHVDGSNNL TMSKTPHVTG SNNLTLSKTS HVAGSSSRID GGKKHRKTNT GASLIIKLDD
801: DDLGEASSAT GASLTQKFIA DFEGWACDSC TFLNADSTTT CLMCSEDAFG SWECEKCTFL NKMHASTCQI CEHRK
001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
Arabidopsis Description
ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.