Factsheet for PGSC0003DMT400039948

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089000.1.1	Tomato	nucleus	93.74	94.79
PGSC0003DMT400043486	Potato	cytosol	64.83	67.56
VIT_18s0001g11740.t01	Wine grape	cytosol	58.01	56.76
Bra001960.1-P	Field mustard	nucleus	56.17	52.41
CDY49559	Canola	nucleus	56.17	52.41
PGSC0003DMT400064832	Potato	nucleus	56.72	52.2
CDX71262	Canola	nucleus	55.62	51.98
AT2G16090.1	Thale cress	nucleus	55.8	51.1
CDY49768	Canola	nucleus	45.12	51.04
CDY03991	Canola	nucleus	44.94	50.41
Bra039068.1-P	Field mustard	nucleus	48.25	50.0
CDY20037	Canola	nucleus	48.07	49.81
CDY00148	Canola	nucleus	44.38	49.79
CDX75425	Canola	nucleus	53.96	49.58
Bra011524.1-P	Field mustard	nucleus	53.96	49.58
Bra033024.1-P	Field mustard	nucleus	47.88	49.43
AT4G34370.1	Thale cress	nucleus	54.33	49.41
CDX69049	Canola	nucleus	53.96	49.08
GSMUA_Achr5P01850_001	Banana	nucleus	48.43	48.79
EER92613	Sorghum	nucleus	54.14	48.68
AT3G27710.1	Thale cress	nucleus	47.51	48.04
Os03t0233500-01	Rice	nucleus	53.78	47.71
HORVU4Hr1G066180.1	Barley	nucleus	54.33	47.58
TraesCS4A01G061500.1	Wheat	nucleus	54.14	47.42
TraesCS4B01G236900.1	Wheat	nucleus	53.96	47.26
TraesCS4D01G238400.2	Wheat	nucleus	53.96	47.26
GSMUA_Achr6P23120_001	Banana	nucleus	55.8	47.12
Zm00001d028285_P003	Maize	nucleus	53.04	46.45
AT3G27720.1	Thale cress	nucleus	40.7	44.83
HORVU1Hr1G018020.1	Barley	cytosol	13.81	40.76
EER93790	Sorghum	nucleus	40.52	40.59
Os03t0625800-01	Rice	cytosol	40.15	40.37
TraesCS4D01G070400.1	Wheat	nucleus	39.41	40.07
Zm00001d013716_P002	Maize	nucleus	39.23	39.89
TraesCS4B01G071700.1	Wheat	nucleus	39.41	39.56
TraesCS4A01G243200.1	Wheat	nucleus	39.78	39.42
Os03t0625933-00	Rice	nucleus	23.76	39.21
TraesCS4D01G070600.1	Wheat	nucleus	38.67	39.03
TraesCS4B01G071800.1	Wheat	nucleus	39.41	38.98
TraesCS4D01G069600.1	Wheat	nucleus	37.57	38.2
Zm00001d048017_P003	Maize	nucleus	53.59	38.04
EER93787	Sorghum	nucleus	37.38	37.94
TraesCS4A01G244200.1	Wheat	nucleus	37.38	37.87
TraesCS4B01G070800.1	Wheat	nucleus	37.2	37.69
HORVU4Hr1G011770.1	Barley	nucleus	37.02	37.43
HORVU4Hr1G011910.1	Barley	cytosol, plastid	39.78	35.29
HORVU7Hr1G068450.2	Barley	nucleus	16.39	34.77
Os03t0626100-01	Rice	nucleus	35.54	33.86
PGSC0003DMT400069483	Potato	nucleus	27.62	27.03
PGSC0003DMT400038933	Potato	nucleus	24.68	15.31

Protein Annotations

Gene3D:1.20.120.1750	EntrezGene:102598785	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	InterPro:IBR_dom
InterPro:IPR001841	InterPro:IPR013083	UniProt:M1B911	PFAM:PF01485	EnsemblPlantsGene:PGSC0003DMG400015452	PGSC:PGSC0003DMG400015452
EnsemblPlants:PGSC0003DMT400039948	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850
UniParc:UPI000296D23A	RefSeq:XP_006342602.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Protein ariadne-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015452]

Coordinates

chr12:-:56778130..56783465

Molecular Weight (calculated)

62601.8 Da

IEP (calculated)

4.665

GRAVY (calculated)

-0.560

Length

543 amino acids

Sequence
(BLAST)

001: MEDYIYVSSD DDEWDNQQYN NDDDDDDDDD DDDDGEFLDG FTEIEQERNG ISKKGPSCKV IRKETLLAAQ KEDLQRVMDL LSLKEHHARS LLIHYRWEVD
101: KVFAVLVERG TEKLYAEAGV TLDGKDEHTS TLSTSEVTCQ ICFEDVPVEK TTVMDCNHIF CNECWTTHFI VKINEGQSKQ VTCMAQKCNV ICDEGKIRDL
201: VTAKDPALAE KFDRFLLESY IDDNKRVKWC PSVPHCGNAI RIEDDEYCCE VECACGVQFC FNCLSEAHSP CSCLMWKLWM KKCKNDGKTV TWISENAKHC
301: PKCHNAVEKN GGCNLVRCRC GQPFCWLCGG ATGLEHTWSS IRGHTCGSYK EGEEEKTTTV RNDLLRYTHY YERYMVHRDS LEAEANMKQK LNFEVLKLEA
401: GELQSKDFSW VENGCNRLLQ LRRILSCSYP VSFYVFGQAL FKDEMTPKER EIKKNLFENL QQQLEINVER LSMFLEEPFA DHPEDKLLET RMKIITLSVL
501: TDNLCKELYD CIDNDLLLPL QQATHTIAHY RSEGVAKASE LPN

Best Arabidopsis Sequence Match ( AT4G34370.1 )
(BLAST)

001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN

Arabidopsis Description

ARI1Probable E3 ubiquitin-protein ligase ARI1 [Source:UniProtKB/Swiss-Prot;Acc:Q949V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.