Factsheet for HORVU4Hr1G011770.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G069600.1	Wheat	nucleus	91.06	91.57
TraesCS4A01G244200.1	Wheat	nucleus	90.88	91.04
TraesCS4B01G070800.1	Wheat	nucleus	89.57	89.74
Os03t0626100-01	Rice	nucleus	54.0	50.88
HORVU4Hr1G011910.1	Barley	cytosol, plastid	55.49	48.69
GSMUA_Achr5P01850_001	Banana	nucleus	38.17	38.03
CDY49768	Canola	nucleus	33.89	37.92
VIT_18s0001g11740.t01	Wine grape	cytosol	39.11	37.84
Solyc04g079780.2.1	Tomato	cytosol	36.69	37.74
PGSC0003DMT400043486	Potato	cytosol	36.5	37.62
PGSC0003DMT400039948	Potato	nucleus	37.43	37.02
CDY00148	Canola	nucleus	33.33	36.98
Bra033024.1-P	Field mustard	nucleus	36.13	36.88
Solyc12g089000.1.1	Tomato	nucleus	36.87	36.87
CDY03991	Canola	nucleus	32.96	36.57
Bra039068.1-P	Field mustard	nucleus	35.38	36.26
CDX71262	Canola	nucleus	39.11	36.14
CDY20037	Canola	nucleus	35.2	36.07
KRH29521	Soybean	nucleus	38.92	36.03
VIT_03s0063g02000.t01	Wine grape	nucleus	39.48	35.99
PGSC0003DMT400064832	Potato	nucleus	39.48	35.93
CDY49559	Canola	nucleus	38.92	35.91
Bra001960.1-P	Field mustard	nucleus	38.92	35.91
Solyc01g109280.2.1	Tomato	nucleus	39.29	35.76
KRH24517	Soybean	nucleus	38.36	35.52
AT3G27710.1	Thale cress	nucleus	35.2	35.2
HORVU4Hr1G066180.1	Barley	nucleus	40.6	35.16
Bra011524.1-P	Field mustard	nucleus	38.36	34.86
CDX75425	Canola	nucleus	38.36	34.86
AT4G34370.1	Thale cress	nucleus	38.55	34.67
CDX69049	Canola	nucleus	38.17	34.34
AT2G16090.1	Thale cress	nucleus	37.8	34.23
AT3G27720.1	Thale cress	nucleus	29.8	32.45
HORVU1Hr1G018020.1	Barley	cytosol	9.5	27.72
HORVU7Hr1G056020.3	Barley	cytosol	13.04	24.82
HORVU3Hr1G049680.1	Barley	nucleus	16.76	24.79
HORVU3Hr1G019640.1	Barley	cytosol, peroxisome, plastid	9.5	23.94
HORVU7Hr1G068450.2	Barley	nucleus	11.36	23.83
HORVU5Hr1G078470.2	Barley	nucleus	23.09	22.22
HORVU5Hr1G089940.1	Barley	cytosol	13.59	21.92
HORVU6Hr1G055260.4	Barley	nucleus	23.65	21.56
HORVU5Hr1G089020.2	Barley	nucleus	22.72	20.13
HORVU7Hr1G056040.5	Barley	nucleus, plastid	24.02	19.43
HORVU2Hr1G085060.3	Barley	cytosol	21.79	17.49

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EMBL:AK363166	InterPro:E3_UB_ligase_RBR	UniProt:F2DGZ9
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:HORVU4Hr1G011770	EnsemblPlants:HORVU4Hr1G011770.1	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF207	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000200636E
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DGZ9]

Coordinates

chrchr4H:-:36944981..36951116

Molecular Weight (calculated)

60819.3 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.448

Length

537 amino acids

Sequence
(BLAST)

001: MASDDEPYLY YDEDEAAEED DGLEADEDDV GLFEEAAPQP ERRADHWAIT RKSLSAAQQQ DVSMVMNLVN VARHNARALL MHHRWKMDRI HDFLERRGRE
101: GLFRDAGIVV PPEDCGTATR ARAAPHKRPR IVTCNVCFED VARPSDVSTM DCGHCFCNDC WTEHFLASVG NGKKHIHCMQ VKCPAICDDA TVRRLLGRKY
201: PDTAKRFDNL VLDSYLDNNA SVKWCPSTPH CGRAIRIVDA SERYCEVECP CGASFCFNCT APAHSPCPCP MWDKWDAKFR GESENLKWIA VNTKSCPNCL
301: RPIEKNGGCN HVSCPCGQHL CYACGGQLHP LHSCNRYDEA GHAANYDSIR RQMLRYTHYC DRFNVHVNSR KAEQAELWPA VQRRAVLLES ATAIRPLIRE
401: ASWLARAHRA LLASRLVLAR SYAFAYYMFG DEVRIYPSEK ANLAIAKVLF EHQQWQLEEN AERLSKVLAA PGVKPVLAED ELLRAMQETS NLAKIVDTHC
501: REMYKVIQDE LLPLLLEPMT IAAYRPDGPD KAKDLPA

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.