Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G019640.1 | Barley | cytosol, peroxisome, plastid | 32.67 | 92.96 |
| TraesCS5D01G370300.1 | Wheat | nucleus | 84.82 | 86.39 |
| TraesCS5B01G364000.1 | Wheat | nucleus | 84.32 | 85.88 |
| TraesCS5A01G361400.1 | Wheat | nucleus | 83.66 | 85.79 |
| HORVU5Hr1G089940.1 | Barley | cytosol | 46.2 | 84.08 |
| HORVU3Hr1G049680.1 | Barley | nucleus | 49.67 | 82.92 |
| Os09t0559000-00 | Rice | cytosol | 44.88 | 51.81 |
| EES08942 | Sorghum | cytosol | 41.09 | 44.95 |
| OQU83976 | Sorghum | cytosol | 39.11 | 44.47 |
| Zm00001d048683_P001 | Maize | nucleus | 42.9 | 44.44 |
| KXG36175 | Sorghum | nucleus | 39.11 | 43.09 |
| HORVU7Hr1G056020.3 | Barley | cytosol | 19.8 | 42.55 |
| OQU83975 | Sorghum | nucleus | 41.09 | 41.71 |
| HORVU6Hr1G055260.4 | Barley | nucleus | 38.61 | 39.73 |
| EES08939 | Sorghum | nucleus | 42.08 | 38.81 |
| HORVU5Hr1G078470.2 | Barley | nucleus | 35.64 | 38.71 |
| HORVU7Hr1G056040.5 | Barley | nucleus, plastid | 38.61 | 35.24 |
| Os09t0559100-00 | Rice | nucleus | 11.39 | 35.03 |
| HORVU2Hr1G085060.3 | Barley | cytosol | 36.8 | 33.33 |
| Zm00001d007709_P003 | Maize | nucleus | 44.06 | 25.95 |
| EES08947 | Sorghum | nucleus | 44.39 | 24.79 |
| HORVU4Hr1G011770.1 | Barley | nucleus | 20.13 | 22.72 |
| HORVU4Hr1G066180.1 | Barley | nucleus | 21.45 | 20.97 |
| HORVU4Hr1G011910.1 | Barley | cytosol, plastid | 19.97 | 19.77 |
| HORVU1Hr1G018020.1 | Barley | cytosol | 4.62 | 15.22 |
| HORVU7Hr1G068450.2 | Barley | nucleus | 4.95 | 11.72 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | UniProt:A0A287S725 | ncoils:Coil | InterPro:E3_UB_ligase_RBR |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 |
| EnsemblPlantsGene:HORVU5Hr1G089020 | EnsemblPlants:HORVU5Hr1G089020.2 | InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF01485 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF216 | SMART:SM00647 | SUPFAM:SSF57850 |
| UniParc:UPI000B47786A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287S725]
Coordinates
chrchr5H:-:583333516..583335334
Molecular Weight (calculated)
68153.8 Da
IEP (calculated)
4.735
GRAVY (calculated)
-0.703
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGDNEEE YHSSPEEAEE GGGDDVDRMS FRSASNESDN DAGADDDCTY GDSDSNDDCT YGDSDSDDGL YDEYEEEGLE EVDDEGGILD EMRFTATQYA
101: VLTMDELRAR QEEHTARVAD LIALPPALAA AVLRHFKWSA QGVWERWFSD ERKVRNAVGL REDGSALSMA VNDATLTCYI CFEVQGPGEM RSAGCAHFYC
201: RGCWSGYVRT AVGDGVRCLS IRCPDMACSA AVVRDLVDDV ADAKDAKRYG EFLVRSYVEE SKRLRWCPAA GCDRAVEFDG EKCTVQLDAW CACGHGFCLA
301: CGEEAHRPVS CDTVRVWMEK NRSDSETAQW VLANTKHCPE CRRPIEKNHG CMHMTCSPPC KHQFCWLCLG PWEKHDGGNF YNCNRYNEAW AEGKYTEEEL
401: RRSQAKVSVD RYLHYYERWA AHERSRQKAL EDVAALGKDG SQREAVAAAF GVVETELDFL EEAFRQVAEC RRMLRWTYAF GYNLDDPAKR DLFEDLQSQA
501: DKSLELLHEC AEKDRKDLVA EAAGVRGAVA DKYLEFRPKL SSLTAVARNH FENMARAFRD GLAEVEVDRP GRGRGRPGRS RPPGCGRPSS AAERRRRRPP
601: LRRSAD
101: VLTMDELRAR QEEHTARVAD LIALPPALAA AVLRHFKWSA QGVWERWFSD ERKVRNAVGL REDGSALSMA VNDATLTCYI CFEVQGPGEM RSAGCAHFYC
201: RGCWSGYVRT AVGDGVRCLS IRCPDMACSA AVVRDLVDDV ADAKDAKRYG EFLVRSYVEE SKRLRWCPAA GCDRAVEFDG EKCTVQLDAW CACGHGFCLA
301: CGEEAHRPVS CDTVRVWMEK NRSDSETAQW VLANTKHCPE CRRPIEKNHG CMHMTCSPPC KHQFCWLCLG PWEKHDGGNF YNCNRYNEAW AEGKYTEEEL
401: RRSQAKVSVD RYLHYYERWA AHERSRQKAL EDVAALGKDG SQREAVAAAF GVVETELDFL EEAFRQVAEC RRMLRWTYAF GYNLDDPAKR DLFEDLQSQA
501: DKSLELLHEC AEKDRKDLVA EAAGVRGAVA DKYLEFRPKL SSLTAVARNH FENMARAFRD GLAEVEVDRP GRGRGRPGRS RPPGCGRPSS AAERRRRRPP
601: LRRSAD
001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
Arabidopsis Description
ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.