Factsheet for HORVU3Hr1G019640.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

peroxisome 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	peroxisome, plastid
MultiLoc:	peroxisome
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G089020.2	Barley	nucleus	92.96	32.67
TraesCS5D01G370300.1	Wheat	nucleus	87.79	31.43
TraesCS5A01G361400.1	Wheat	nucleus	86.85	31.3
TraesCS5B01G364000.1	Wheat	nucleus	86.39	30.92
HORVU3Hr1G049680.1	Barley	nucleus	46.95	27.55
Os09t0559100-00	Rice	nucleus	22.07	23.86
Os09t0559000-00	Rice	cytosol	55.4	22.48
OQU83976	Sorghum	cytosol	53.52	21.39
EES08942	Sorghum	cytosol	51.17	19.68
Zm00001d048683_P001	Maize	nucleus	53.52	19.49
KXG36175	Sorghum	nucleus	49.3	19.09
OQU83975	Sorghum	nucleus	52.11	18.59
HORVU7Hr1G056020.3	Barley	cytosol	24.41	18.44
EES08939	Sorghum	nucleus	51.64	16.74
HORVU6Hr1G055260.4	Barley	nucleus	42.72	15.45
HORVU5Hr1G078470.2	Barley	nucleus	38.5	14.7
HORVU7Hr1G056040.5	Barley	nucleus, plastid	43.19	13.86
HORVU2Hr1G085060.3	Barley	cytosol	41.31	13.15
Zm00001d007709_P003	Maize	nucleus	52.58	10.88
EES08947	Sorghum	nucleus	52.11	10.23
HORVU4Hr1G011770.1	Barley	nucleus	23.94	9.5
HORVU4Hr1G066180.1	Barley	nucleus	26.29	9.03
HORVU4Hr1G011910.1	Barley	cytosol, plastid	24.88	8.66
HORVU5Hr1G089940.1	Barley	cytosol	13.15	8.41
HORVU7Hr1G068450.2	Barley	nucleus	0.0	0.0
HORVU1Hr1G018020.1	Barley	cytosol	0.0	0.0

Protein Annotations

MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	UniProt:A0A287KC49	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G019640	EnsemblPlants:HORVU3Hr1G019640.1
InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685
PANTHER:PTHR11685:SF216	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000B476F61	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287KC49]

Coordinates

chrchr3H:+:56364886..56366859

Molecular Weight (calculated)

23692.0 Da

IEP (calculated)

4.864

GRAVY (calculated)

-0.168

Length

213 amino acids

Sequence
(BLAST)

001: MDELHARQEE HTARVADLIE LPLALAAAVL WHFKWSAQGV WERWFSDEHK VRDAVGLPED GNVLSMAVND GTLTCYICFE VQGPGEMRSA GCAHFYCRGC
101: WSGYVRTAVG DGVRCLSIRC PNMGCSAAVV RDMVDDVADD KDAKRYDEFL VRSYVEESKR LRWCPAAGCD RAVEFDGEKC TVQLDAWCAC GHGFCLACGE
201: EAHRPVSCDT VRV

Best Arabidopsis Sequence Match ( AT1G05890.1 )
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN

Arabidopsis Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.