Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G297300.1 | Wheat | nucleus | 92.83 | 92.17 |
| TraesCS5A01G298200.1 | Wheat | nucleus | 92.11 | 91.79 |
| TraesCS5D01G305000.1 | Wheat | nucleus | 92.11 | 91.46 |
| Os09t0513800-01 | Rice | cytosol, mitochondrion, nucleus | 66.85 | 68.57 |
| HORVU7Hr1G056020.3 | Barley | cytosol | 31.18 | 61.7 |
| HORVU7Hr1G056040.5 | Barley | nucleus, plastid | 63.8 | 53.61 |
| HORVU6Hr1G055260.4 | Barley | nucleus | 56.27 | 53.31 |
| HORVU2Hr1G085060.3 | Barley | cytosol | 56.45 | 47.09 |
| HORVU5Hr1G089940.1 | Barley | cytosol | 25.27 | 42.34 |
| HORVU3Hr1G049680.1 | Barley | nucleus | 27.42 | 42.15 |
| HORVU3Hr1G019640.1 | Barley | cytosol, peroxisome, plastid | 14.7 | 38.5 |
| HORVU5Hr1G089020.2 | Barley | nucleus | 38.71 | 35.64 |
| HORVU4Hr1G011770.1 | Barley | nucleus | 22.22 | 23.09 |
| HORVU4Hr1G066180.1 | Barley | nucleus | 24.19 | 21.77 |
| HORVU4Hr1G011910.1 | Barley | cytosol, plastid | 23.66 | 21.57 |
| HORVU1Hr1G018020.1 | Barley | cytosol | 3.94 | 11.96 |
| HORVU7Hr1G068450.2 | Barley | nucleus | 4.3 | 9.38 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | UniProt:A0A287RXK9 | ncoils:Coil | InterPro:E3_UB_ligase_RBR |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 |
| EnsemblPlantsGene:HORVU5Hr1G078470 | EnsemblPlants:HORVU5Hr1G078470.2 | InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF01485 |
| PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF219 | SMART:SM00647 | SUPFAM:SSF57850 | UniParc:UPI000B460C91 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287RXK9]
Coordinates
chrchr5H:-:554917235..554925472
Molecular Weight (calculated)
63727.4 Da
IEP (calculated)
5.489
GRAVY (calculated)
-0.697
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDDEPWGG SDSDPVVVGD YYHDRSDGDS GGGEEEEEGS DCAGDDYEVH DEVASLREKR YVVLSENDIR ERQEEAIRRV SSIFSIPRES ASILLRQYKW
101: NISKLSDEWF ADEERVRHFV GLPTNGVVLP DCQELTCGIC FEGYSTSALS SAGCVHLYCH ECWEGYISAS INDGPGCLSL RCPEPSCTAM VLEETINRFA
201: KAEEKVKYKQ FLSCSYIEDN RKIKWCPAPD CTRALEFLGD ENYDVSCMCK FSFCWNCTEE THRPVSCETV SKWILKNSAE SENVNWIIAN SKPCPKCKRP
301: IEKNHGCMHM TCRPPCKFQF CWLCLGDWSE HGSRTTGGNY ACNRYEADKK KGIYDEAEAE RERAKNSLVR YSHYYERWAS NQKSRQKAQG DLQKFESELV
401: KFSDFLGIPE SQLKFIPEAW SQIVECRQVL QWTYAYGYYL DDKAKNDFFV YLQGEAESGL ERLHKCAEKE IHAILPKAFE TEPLTSSQDF NEFRAKLAGL
501: TSVTRNYFEN LVRALEAGLE DVRVTGQSTS KRKARATPKK KPFARGKSGR NKKARTTS
101: NISKLSDEWF ADEERVRHFV GLPTNGVVLP DCQELTCGIC FEGYSTSALS SAGCVHLYCH ECWEGYISAS INDGPGCLSL RCPEPSCTAM VLEETINRFA
201: KAEEKVKYKQ FLSCSYIEDN RKIKWCPAPD CTRALEFLGD ENYDVSCMCK FSFCWNCTEE THRPVSCETV SKWILKNSAE SENVNWIIAN SKPCPKCKRP
301: IEKNHGCMHM TCRPPCKFQF CWLCLGDWSE HGSRTTGGNY ACNRYEADKK KGIYDEAEAE RERAKNSLVR YSHYYERWAS NQKSRQKAQG DLQKFESELV
401: KFSDFLGIPE SQLKFIPEAW SQIVECRQVL QWTYAYGYYL DDKAKNDFFV YLQGEAESGL ERLHKCAEKE IHAILPKAFE TEPLTSSQDF NEFRAKLAGL
501: TSVTRNYFEN LVRALEAGLE DVRVTGQSTS KRKARATPKK KPFARGKSGR NKKARTTS
001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
Arabidopsis Description
ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.