Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G305000.1 | Wheat | nucleus | 98.57 | 98.22 |
| TraesCS5B01G297300.1 | Wheat | nucleus | 98.21 | 97.86 |
| HORVU5Hr1G078470.2 | Barley | nucleus | 91.79 | 92.11 |
| Os09t0513800-01 | Rice | cytosol, mitochondrion, nucleus | 67.5 | 69.49 |
| TraesCS7A01G267200.4 | Wheat | nucleus | 66.96 | 62.19 |
| TraesCS2A01G349600.1 | Wheat | nucleus | 58.57 | 55.69 |
| TraesCS6A01G216900.1 | Wheat | nucleus | 57.32 | 54.5 |
| TraesCS4A01G376800.1 | Wheat | nucleus | 35.71 | 40.73 |
| TraesCS5A01G361400.1 | Wheat | nucleus | 38.93 | 36.89 |
| TraesCS6A01G417200.1 | Wheat | nucleus | 36.43 | 35.92 |
| TraesCS4A01G243200.1 | Wheat | nucleus | 24.64 | 25.18 |
| TraesCS4A01G244200.1 | Wheat | nucleus | 22.68 | 23.69 |
| TraesCS4A01G061500.1 | Wheat | nucleus | 24.46 | 22.1 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR013083 |
| PFAM:PF01485 | PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF219 | SMART:SM00647 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:TraesCS5A01G298200 | EnsemblPlants:TraesCS5A01G298200.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:+:505589268..505596795
Molecular Weight (calculated)
63452.3 Da
IEP (calculated)
5.478
GRAVY (calculated)
-0.661
Length
560 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDNEPWGG SDDDPVAVGD YYYDCSDGGG GGGGEEDEGS DCAGDDYEVR EEVASMREKR YIVLSENDIH ERQEEAIRRV SSIFSIPRES ACILLRHYKW
101: NISKLNDEWF ADEERVRHFV GLPTNGAVLP DCQELTCGIC FEGYSTSALS SAGCVHLYCH ECWEGYISAS INDGPGCLSL RCPEPSCTAM VLEETINRLA
201: KDEEKVKYKQ FLSCSYVEDN KKIKWCPAPD CTRAVEFLGD ENYDVSCMCK FSFCWNCTEE THRPVSCETV SKWILKNSAE SENVNWIIAN SKPCPKCKRP
301: IEKNHGCMHM TCRPPCKFQF CWLCLGDWSE HGSRTTGGNY ACNRYEADKK KGIYDEAEAQ RERAKNSLVR YTHYFERWAS NQKSRQKAQG DLQKFESELA
401: KLSDILGIPE SQLKFIPEAW SQIVECRQVL QWTYAYGYYL DDKAKNDFFV YLQGEAESGL ERLHKCAEKD IHAILPKAGE TEPLPSLQDF NEFRVKLAGL
501: TSVTRNYFEN LVQALEAGLE DVRVTGGQST SKKKARTASK RKPSAKGKSG RNKKARITIS
101: NISKLNDEWF ADEERVRHFV GLPTNGAVLP DCQELTCGIC FEGYSTSALS SAGCVHLYCH ECWEGYISAS INDGPGCLSL RCPEPSCTAM VLEETINRLA
201: KDEEKVKYKQ FLSCSYVEDN KKIKWCPAPD CTRAVEFLGD ENYDVSCMCK FSFCWNCTEE THRPVSCETV SKWILKNSAE SENVNWIIAN SKPCPKCKRP
301: IEKNHGCMHM TCRPPCKFQF CWLCLGDWSE HGSRTTGGNY ACNRYEADKK KGIYDEAEAQ RERAKNSLVR YTHYFERWAS NQKSRQKAQG DLQKFESELA
401: KLSDILGIPE SQLKFIPEAW SQIVECRQVL QWTYAYGYYL DDKAKNDFFV YLQGEAESGL ERLHKCAEKD IHAILPKAGE TEPLPSLQDF NEFRVKLAGL
501: TSVTRNYFEN LVQALEAGLE DVRVTGGQST SKKKARTASK RKPSAKGKSG RNKKARITIS
001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
Arabidopsis Description
ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.