Factsheet for TraesCS4A01G243200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G071800.1	Wheat	nucleus	98.36	98.18
TraesCS4D01G070600.1	Wheat	nucleus	96.17	97.96
HORVU4Hr1G011910.1	Barley	cytosol, plastid	93.98	84.15
Os03t0625800-01	Rice	cytosol	65.51	66.48
Zm00001d013716_P002	Maize	nucleus	63.87	65.54
EER93790	Sorghum	nucleus	63.5	64.21
TraesCS4A01G244200.1	Wheat	nucleus	55.11	56.34
CDX71262	Canola	nucleus	44.34	41.82
Bra001960.1-P	Field mustard	nucleus	44.16	41.58
CDY49559	Canola	nucleus	44.16	41.58
AT3G27710.1	Thale cress	nucleus	40.69	41.53
Solyc04g079780.2.1	Tomato	cytosol	39.05	41.0
PGSC0003DMT400043486	Potato	cytosol	38.87	40.88
Bra011524.1-P	Field mustard	nucleus	43.98	40.78
CDX75425	Canola	nucleus	43.98	40.78
VIT_18s0001g11740.t01	Wine grape	cytosol	41.24	40.72
CDY49768	Canola	nucleus	35.58	40.62
PGSC0003DMT400064832	Potato	nucleus	43.61	40.51
Solyc01g109280.2.1	Tomato	nucleus	43.61	40.51
GSMUA_Achr5P01850_001	Banana	nucleus	39.78	40.45
CDX69049	Canola	nucleus	43.98	40.37
CDY03991	Canola	nucleus	35.4	40.08
Bra039068.1-P	Field mustard	nucleus	38.32	40.08
Solyc12g089000.1.1	Tomato	nucleus	39.23	40.04
PGSC0003DMT400039948	Potato	nucleus	39.42	39.78
CDY20037	Canola	nucleus	37.96	39.69
CDY00148	Canola	nucleus	35.04	39.67
AT2G16090.1	Thale cress	nucleus	42.88	39.63
VIT_03s0063g02000.t01	Wine grape	nucleus	42.52	39.56
Bra033024.1-P	Field mustard	nucleus	37.96	39.54
AT4G34370.1	Thale cress	nucleus	42.88	39.36
TraesCS4A01G061500.1	Wheat	nucleus	44.53	39.35
KRH24517	Soybean	nucleus	41.42	39.14
KRH29521	Soybean	nucleus	41.24	38.97
AT3G27720.1	Thale cress	nucleus	32.48	36.11
TraesCS4A01G376800.1	Wheat	nucleus	23.72	26.48
TraesCS5A01G298200.1	Wheat	nucleus	25.18	24.64
TraesCS7A01G267200.4	Wheat	nucleus	25.0	22.72
TraesCS6A01G216900.1	Wheat	nucleus	24.09	22.41
TraesCS2A01G349600.1	Wheat	nucleus	23.18	21.56
TraesCS6A01G417200.1	Wheat	nucleus	21.72	20.95
TraesCS5A01G361400.1	Wheat	nucleus	22.26	20.64

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4A01G243200
EnsemblPlants:TraesCS4A01G243200.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:553310632..553313968

Molecular Weight (calculated)

62874.4 Da

IEP (calculated)

5.411

GRAVY (calculated)

-0.588

Length

548 amino acids

Sequence
(BLAST)

001: MASDDDCYYY YDDDGDGEED EEDGEEAADW DGLAVGADED DLGLLEDDPP HSERRVDCWA ITEDTLSAAQ QEDLSTMMNL LNIKQHQARS LFIHHRWKID
101: CIYDCLDRKG RDRMLREAGI VLQEKSSMLI GALRTPSTSV QCNVCFDDDL SPAAVSTMDC GHCFCNDCWT EHFNAAIDGG KKQIRCMEVK CLAICDEGIV
201: QRLLGQKYPD AAKRFDRFLL ESYLEDNDFV KWCPSIPHCG RAIRVGTGDR YCEVKCLCGV SFCFNCMEQT HSPCPCTIWK QWNTRIHGES ENIKWIVKNT
301: KSCPKCFKPI EKRDGCNLVK CKCGQYMCWL CGGPTGSAHT WTNIEGHSCN RYKESKDKVD TGRRQLERYA HYCNRFKIHE DSYKEQHEKL GPAIKEKVKQ
401: LESNHLRPRL IRDGDWLTDA HQRLLWSRQV VSRSYAFAYH MFGGELRAHR SERGSLAPAQ NLFESQQEQL ERHVEQLSKV LVTDIPALPD QEIVKVKQEV
501: VNLDKILERL CGEMYTCIQD ELLPLLTEPM DIAAYTPDGP VRAKVFRA

Best Arabidopsis Sequence Match ( AT4G34370.1 )
(BLAST)

001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN

Arabidopsis Description

ARI1Probable E3 ubiquitin-protein ligase ARI1 [Source:UniProtKB/Swiss-Prot;Acc:Q949V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.