Factsheet for TraesCS2A01G349600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G348000.2	Wheat	nucleus	99.83	99.83
TraesCS2B01G368000.2	Wheat	nucleus	99.49	99.49
Os04t0492100-01	Rice	nucleus	74.02	92.37
EES11042	Sorghum	nucleus	92.19	92.19
Zm00001d025750_P011	Maize	extracellular	92.19	92.19
Zm00001d003207_P001	Maize	nucleus	91.68	91.68
TraesCS6A01G216900.1	Wheat	nucleus	85.4	85.4
HORVU2Hr1G085060.3	Barley	cytosol	91.17	80.27
GSMUA_Achr8P28870_001	Banana	nucleus	79.12	79.39
GSMUA_Achr6P28580_001	Banana	nucleus	75.04	78.93
GSMUA_Achr9P07970_001	Banana	nucleus	73.68	78.62
GSMUA_Achr3P16920_001	Banana	nucleus	76.4	76.66
VIT_05s0102g00160.t01	Wine grape	nucleus	75.04	75.3
KRH23186	Soybean	nucleus	73.34	73.34
Bra021726.1-P	Field mustard	nucleus	62.48	73.31
KRH10154	Soybean	nucleus	73.01	73.01
KRH29654	Soybean	nucleus	71.99	72.35
Solyc06g073340.2.1	Tomato	nucleus	67.4	72.18
KRH24651	Soybean	nucleus	71.31	71.67
PGSC0003DMT400069483	Potato	nucleus	67.23	71.35
CDY15392	Canola	nucleus	67.4	71.27
CDY19083	Canola	nucleus	67.06	71.17
Bra022845.1-P	Field mustard	nucleus	66.72	71.07
AT2G31510.1	Thale cress	nucleus	67.74	71.0
CDX84781	Canola	nucleus	66.72	70.94
CDY23938	Canola	nucleus	66.04	69.84
CDY47704	Canola	nucleus	64.69	68.28
Bra015463.1-P	Field mustard	nucleus	64.52	68.1
CDY10162	Canola	nucleus	63.67	67.57
CDX86547	Canola	nucleus	63.33	67.33
CDY63791	Canola	nucleus	62.82	66.91
AT1G05890.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	61.97	61.45
CDY34490	Canola	cytosol	12.73	60.98
CDX79440	Canola	cytosol	17.66	60.82
Zm00001d046141_P001	Maize	cytosol	28.52	59.15
CDX70415	Canola	nucleus	52.63	59.05
CDY68344	Canola	nucleus	49.92	59.04
TraesCS7A01G267200.4	Wheat	nucleus	60.27	58.87
Bra021742.1-P	Field mustard	nucleus	49.58	58.63
TraesCS5A01G298200.1	Wheat	nucleus	55.69	58.57
Bra006112.1-P	Field mustard	nucleus	52.8	58.24
CDY68345	Canola	cytosol	43.12	57.86
CDX78438	Canola	nucleus	48.39	57.58
CDX91196	Canola	nucleus	48.9	56.58
Bra023338.1-P	Field mustard	nucleus	52.8	56.34
CDY61443	Canola	nucleus	51.1	55.74
AT2G31780.1	Thale cress	nucleus	40.92	54.4
CDY15373	Canola	nucleus	49.92	53.75
AT2G31760.1	Thale cress	nucleus	46.86	53.7
CDX84759	Canola	nucleus	47.37	53.55
Bra022865.1-P	Field mustard	nucleus	47.37	53.55
Bra005642.1-P	Field mustard	nucleus	46.35	53.53
AT2G31770.1	Thale cress	nucleus	48.22	52.3
CDY15374	Canola	nucleus	50.25	51.66
CDY42068	Canola	nucleus	40.07	51.64
CDX79439	Canola	nucleus	28.01	50.46
CDY34512	Canola	cytosol, nucleus, plastid	23.09	46.26
TraesCS4A01G376800.1	Wheat	nucleus	35.14	42.16
TraesCS5A01G361400.1	Wheat	nucleus	38.88	38.75
TraesCS6A01G417200.1	Wheat	nucleus	35.14	36.44
TraesCS4A01G061500.1	Wheat	nucleus	25.64	24.35
TraesCS4A01G244200.1	Wheat	nucleus	21.22	23.32
TraesCS4A01G243200.1	Wheat	nucleus	21.56	23.18

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR001876	InterPro:IPR013083
PFAM:PF01485	ScanProsite:PS01358	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	SMART:SM00547
SMART:SM00647	SUPFAM:SSF57850	SUPFAM:SSF90209	EnsemblPlantsGene:TraesCS2A01G349600	EnsemblPlants:TraesCS2A01G349600.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	TIGR:cd16623	SEG:seg	:

Description

No Description!

Coordinates

chr2A:-:589001325..589010438

Molecular Weight (calculated)

66463.9 Da

IEP (calculated)

5.123

GRAVY (calculated)

-0.735

Length

589 amino acids

Sequence
(BLAST)

001: MDSEDDMHDA NDSADDDFYS GGEAGLAASD DGDADYDFAD HDSDDSPELL SHRQQQNYCI LSEAGIKQRQ EDDINRVSTV LSISKSEACA LLRSYNWSVS
101: KVHDEWFVDE ERVRKVVGFP EKRIEMPNDR ELACGICFEN CPHASMSAAA CGHPFCSVCW RGYISTAIND GPGCLMLRCP DPSCAAAVGQ DMINSLANEE
201: DKEKYGRYLR RSYIEDNRKT KWCPAPGCEY AVEFVVGSGS YDVNCNCSYG FCWNCTEEAH RPVDCATVSK WILKNSAESE NMNWILANSK PCPKCKRPIE
301: KNQGCMHITC TPPCKFEFCW LCLGSWSEHG ERTGGFYACN RYEAARQEGA YDESERRREM AKNSLERYTH YYERWAANQS SRQKALGDLQ SLQNDKLEKL
401: SDIQSQPESQ LKFIIEAWLQ IVECRRVLKW TYAYGYYLPE HEHAKRQFFE YLQGEAESGL ERLHQCAEKE LQIYLEAESP SKDFNDFRTK LAGLTSVTRN
501: YFENLVRALE TGLNDVGPST SQSTGIKNTT SKSLGGKSKT GKNRASAAGS KSGSSSRGVD DSNIWTCDQC TYVNPRSAKA CQACDHQHR

Best Arabidopsis Sequence Match ( AT1G65430.1 )
(BLAST)

001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR

Arabidopsis Description

ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.