Factsheet for TraesCS4A01G244200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G069600.1	Wheat	nucleus	97.39	97.75
TraesCS4B01G070800.1	Wheat	nucleus	95.71	95.71
HORVU4Hr1G011770.1	Barley	nucleus	91.04	90.88
TraesCS4A01G243200.1	Wheat	nucleus	56.34	55.11
Os03t0626100-01	Rice	nucleus	55.6	52.28
GSMUA_Achr5P01850_001	Banana	nucleus	39.37	39.15
VIT_18s0001g11740.t01	Wine grape	cytosol	39.55	38.2
Solyc04g079780.2.1	Tomato	cytosol	36.94	37.93
PGSC0003DMT400043486	Potato	cytosol	36.75	37.81
PGSC0003DMT400039948	Potato	nucleus	37.87	37.38
CDY49768	Canola	nucleus	33.4	37.29
CDX71262	Canola	nucleus	40.3	37.18
PGSC0003DMT400064832	Potato	nucleus	40.86	37.12
VIT_03s0063g02000.t01	Wine grape	nucleus	40.67	37.01
Solyc01g109280.2.1	Tomato	nucleus	40.67	36.95
CDY49559	Canola	nucleus	40.11	36.94
Bra001960.1-P	Field mustard	nucleus	40.11	36.94
Solyc12g089000.1.1	Tomato	nucleus	36.94	36.87
KRH29521	Soybean	nucleus	39.74	36.72
AT3G27710.1	Thale cress	nucleus	36.57	36.5
CDY00148	Canola	nucleus	32.84	36.36
Bra033024.1-P	Field mustard	nucleus	35.63	36.31
KRH24517	Soybean	nucleus	39.18	36.21
CDY03991	Canola	nucleus	32.46	35.95
Bra039068.1-P	Field mustard	nucleus	35.07	35.88
Bra011524.1-P	Field mustard	nucleus	39.55	35.87
CDX75425	Canola	nucleus	39.55	35.87
CDY20037	Canola	nucleus	34.89	35.69
AT4G34370.1	Thale cress	nucleus	39.74	35.68
TraesCS4A01G061500.1	Wheat	nucleus	41.04	35.48
CDX69049	Canola	nucleus	39.37	35.34
AT2G16090.1	Thale cress	nucleus	38.99	35.24
AT3G27720.1	Thale cress	nucleus	30.97	33.67
TraesCS4A01G376800.1	Wheat	nucleus	23.88	26.07
TraesCS5A01G298200.1	Wheat	nucleus	23.69	22.68
TraesCS6A01G216900.1	Wheat	nucleus	23.69	21.56
TraesCS2A01G349600.1	Wheat	nucleus	23.32	21.22
TraesCS7A01G267200.4	Wheat	nucleus	23.69	21.06
TraesCS5A01G361400.1	Wheat	nucleus	23.13	20.98
TraesCS6A01G417200.1	Wheat	nucleus	20.15	19.01

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF207	SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4A01G244200
EnsemblPlants:TraesCS4A01G244200.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:554840090..554850060

Molecular Weight (calculated)

60908.1 Da

IEP (calculated)

6.278

GRAVY (calculated)

-0.513

Length

536 amino acids

Sequence
(BLAST)

001: MASDDESCLY YDDEDDEAEE DGLEADEDDV GLFEDAAPQP EHRADHWAIT RKSLSAAQQQ DVSMVMNLVN IERHNARALL MHHRWKMDRI HDFLERRGRE
101: GLFREARIVV PPEDSSTAAR ARAPPHKRPR TVTCNVCFED VSRPSDVSTM DCGHCFCNDC WTEHFFASLG NGKKHIHCMQ VKCPAICDDA TVRRLLGRKY
201: PDAAKRFDNL VLDSYLDNNA SVKWCPSAPH CGRAIRVVDA SERYCEVECP CGVSFCFNCA APAHSPCPCP MWDKWDAKFH GESENLKWIA VNTKSCPKCL
301: RPIEKNGGCN HVSCPCGQHL CYACGGRLDT LHNCNRYDEA GHANYDSIRR QMLRYTHYCD RFNVHVNSRT AEQTQLWPAI QKRAVLLESA TAIRPLIREA
401: SWMARAHRAL LASRLVLARS YAFAYYMFGD EVRTYPSEKA NLPIAKVLFE DQQWQLEENA EKLSKVLAAE AKPVLAEEEV LQAMQETSNL AKIVDTHCRE
501: MYKCIQDELL PLLLEPMTIA PYRPDGPDKA KDLPAP

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.