Factsheet for VIT_03s0063g02000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109280.2.1	Tomato	nucleus	77.08	76.95
PGSC0003DMT400064832	Potato	nucleus	77.08	76.95
KRH24517	Soybean	nucleus	74.19	75.34
KRH29521	Soybean	nucleus	73.68	74.83
Bra001960.1-P	Field mustard	nucleus	70.12	70.96
CDY49559	Canola	nucleus	69.95	70.79
CDX71262	Canola	nucleus	69.44	70.4
AT2G16090.1	Thale cress	nucleus	70.46	69.98
VIT_18s0001g11740.t01	Wine grape	cytosol	64.35	68.29
AT4G34370.1	Thale cress	nucleus	69.1	68.17
CDX75425	Canola	nucleus	67.4	67.17
Bra011524.1-P	Field mustard	nucleus	67.23	67.01
CDX69049	Canola	nucleus	67.57	66.67
EER92613	Sorghum	nucleus	63.67	62.09
Os03t0233500-01	Rice	nucleus	63.5	61.11
GSMUA_Achr6P23120_001	Banana	nucleus	66.55	60.96
TraesCS4D01G238400.2	Wheat	nucleus	62.99	59.84
TraesCS4A01G061500.1	Wheat	nucleus	62.99	59.84
TraesCS4B01G236900.1	Wheat	nucleus	62.99	59.84
HORVU4Hr1G066180.1	Barley	nucleus	62.82	59.68
Zm00001d028285_P003	Maize	nucleus	62.82	59.68
CDY49768	Canola	nucleus	47.2	57.92
AT3G27710.1	Thale cress	nucleus	52.8	57.91
CDY03991	Canola	nucleus	46.18	56.2
Bra033024.1-P	Field mustard	nucleus	50.08	56.08
Bra039068.1-P	Field mustard	nucleus	48.73	54.77
HORVU7Hr1G068450.2	Barley	nucleus	23.77	54.69
CDY20037	Canola	nucleus	48.56	54.58
CDY00148	Canola	nucleus	44.82	54.55
HORVU1Hr1G018020.1	Barley	cytosol	16.98	54.35
AT3G27720.1	Thale cress	nucleus	44.99	53.75
GSMUA_Achr5P01850_001	Banana	nucleus	47.88	52.32
Zm00001d048017_P003	Maize	nucleus	61.29	47.19
TraesCS4B01G071700.1	Wheat	nucleus	40.07	43.62
EER93790	Sorghum	nucleus	40.07	43.54
TraesCS4D01G070400.1	Wheat	nucleus	39.39	43.45
TraesCS4D01G070600.1	Wheat	nucleus	38.88	42.57
TraesCS4A01G243200.1	Wheat	nucleus	39.56	42.52
TraesCS4B01G071800.1	Wheat	nucleus	39.56	42.44
Os03t0625800-01	Rice	cytosol	38.88	42.41
Zm00001d013716_P002	Maize	nucleus	38.03	41.95
Os03t0625933-00	Rice	nucleus	23.26	41.64
TraesCS4D01G069600.1	Wheat	nucleus	37.52	41.39
EER93787	Sorghum	nucleus	37.18	40.93
TraesCS4A01G244200.1	Wheat	nucleus	37.01	40.67
TraesCS4B01G070800.1	Wheat	nucleus	36.84	40.49
HORVU4Hr1G011770.1	Barley	nucleus	35.99	39.48
HORVU4Hr1G011910.1	Barley	cytosol, plastid	39.39	37.91
Os03t0626100-01	Rice	nucleus	35.65	36.84
VIT_05s0102g00160.t01	Wine grape	nucleus	26.99	27.09
VIT_00s0207g00090.t01	Wine grape	nucleus	26.49	26.58

Protein Annotations

Gene3D:1.20.120.1750	EntrezGene:100257215	wikigene:100257215	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	ProteinID:CBI32541
ProteinID:CBI32541.3	UniProt:D7TPW8	InterPro:E3_UB_ligase_RBR	EMBL:FN596006	GO:GO:0000151	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031624	GO:GO:0032436	GO:GO:0042787	GO:GO:0046872	GO:GO:0061630
InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100257215	wikigene:LOC100257215	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	TIGR:TC56375
UniParc:UPI00015C84AE	ArrayExpress:VIT_03s0063g02000	EnsemblPlantsGene:VIT_03s0063g02000	EnsemblPlants:VIT_03s0063g02000.t01	unigene:Vvi.10205	RefSeq:XP_002284665
RefSeq:XP_002284665.1	RefSeq:XP_003631625	RefSeq:XP_003631625.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7TPW8]

Coordinates

chr3:-:5278142..5285565

Molecular Weight (calculated)

67797.0 Da

IEP (calculated)

6.007

GRAVY (calculated)

-0.616

Length

589 amino acids

Sequence
(BLAST)

001: MEDYANSDEE YYYSDRDSFD GLVNEESDFQ WVPPKAPSSQ VITKESLLTA QRDDLRRVMD LLSLREHHAR TLLIHHRWDV EKLFAVMVEK GKPCLFAEAG
101: VPLMEHQIVP LPLSSSTLMC DICMEAVCSK DSTKMDCGHC FCNNCWTEHF VVRINEGQSR RIRCMAYKCN AICDEAIVRN LVGRRHPDLA EKFDRFLLES
201: YIEDNKMVKW CPSAPHCGNA IRVEDDEFCE VECSCGLQFC FSCLSEAHSP CSCLMWEFWT KKCRDESETV NWITVHTKPC PKCHKPVEKN GGCNLVSCIC
301: GQAFCWLCGG ATGRDHTWSS ISGHSCGRYK EDREKKAERA KRDLYRYMHY HNRYKAHTDS FKLESKLKDT IKVKVSNSEE KESTLRDFSW VTNGLYRLFR
401: SRRVLSYSYP FAFYMFGDDL FNDEMTKEER EIKQHLFEDQ QQQLEANVEK LSKFIEEPFD QYEEDKVRDI RMQVINLSVI TDTLCKKMYE CIENDLLGSL
501: QHGIHNIAPY KSKGIERASE LITCQSNKAS NADNCPSSEN GTDGGTAEFD RPSGSGSSYE SGYSSRKRAR KEGLGGIDLN LPAEVVDRN

Best Arabidopsis Sequence Match ( AT4G34370.1 )
(BLAST)

001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN

Arabidopsis Description

ARI1Probable E3 ubiquitin-protein ligase ARI1 [Source:UniProtKB/Swiss-Prot;Acc:Q949V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.