Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75425 | Canola | nucleus | 97.82 | 98.82 |
| AT4G34370.1 | Thale cress | nucleus | 84.92 | 84.92 |
| CDY49559 | Canola | nucleus | 72.03 | 73.88 |
| CDX71262 | Canola | nucleus | 71.02 | 72.98 |
| VIT_03s0063g02000.t01 | Wine grape | nucleus | 66.67 | 67.57 |
| KRH24517 | Soybean | nucleus | 64.15 | 66.03 |
| KRH29521 | Soybean | nucleus | 63.65 | 65.52 |
| Solyc01g109280.2.1 | Tomato | nucleus | 63.65 | 64.41 |
| PGSC0003DMT400064832 | Potato | nucleus | 63.48 | 64.24 |
| CDY49768 | Canola | nucleus | 50.25 | 62.5 |
| CDY03991 | Canola | nucleus | 50.42 | 62.19 |
| CDY20037 | Canola | nucleus | 53.27 | 60.69 |
| CDY00148 | Canola | nucleus | 48.24 | 59.5 |
| VIT_18s0001g11740.t01 | Wine grape | cytosol | 55.28 | 59.46 |
| EER92613 | Sorghum | nucleus | 58.29 | 57.62 |
| TraesCS4A01G061500.1 | Wheat | nucleus | 58.79 | 56.61 |
| GSMUA_Achr6P23120_001 | Banana | nucleus | 60.8 | 56.45 |
| TraesCS4B01G236900.1 | Wheat | nucleus | 58.63 | 56.45 |
| Os03t0233500-01 | Rice | nucleus | 57.79 | 56.37 |
| Solyc04g079780.2.1 | Tomato | cytosol | 49.25 | 56.32 |
| TraesCS4D01G238400.2 | Wheat | nucleus | 58.46 | 56.29 |
| HORVU4Hr1G066180.1 | Barley | nucleus | 58.46 | 56.29 |
| PGSC0003DMT400043486 | Potato | cytosol | 48.74 | 55.85 |
| HORVU1Hr1G018020.1 | Barley | cytosol | 17.09 | 55.43 |
| Zm00001d028285_P003 | Maize | nucleus | 57.12 | 55.0 |
| PGSC0003DMT400039948 | Potato | nucleus | 49.08 | 53.96 |
| Solyc12g089000.1.1 | Tomato | nucleus | 47.74 | 53.07 |
| HORVU7Hr1G068450.2 | Barley | nucleus | 21.94 | 51.17 |
| GSMUA_Achr5P01850_001 | Banana | nucleus | 44.39 | 49.17 |
| Zm00001d048017_P003 | Maize | nucleus | 57.12 | 44.58 |
| TraesCS4A01G243200.1 | Wheat | nucleus | 40.37 | 43.98 |
| TraesCS4B01G071800.1 | Wheat | nucleus | 40.37 | 43.9 |
| TraesCS4D01G070600.1 | Wheat | nucleus | 39.36 | 43.68 |
| EER93790 | Sorghum | nucleus | 39.2 | 43.17 |
| Zm00001d013716_P002 | Maize | nucleus | 38.53 | 43.07 |
| TraesCS4D01G070400.1 | Wheat | nucleus | 38.53 | 43.07 |
| Os03t0625800-01 | Rice | cytosol | 38.53 | 42.59 |
| Os03t0625933-00 | Rice | nucleus | 23.28 | 42.25 |
| TraesCS4B01G071700.1 | Wheat | nucleus | 38.02 | 41.96 |
| EER93787 | Sorghum | nucleus | 36.52 | 40.75 |
| TraesCS4D01G069600.1 | Wheat | nucleus | 35.68 | 39.89 |
| TraesCS4A01G244200.1 | Wheat | nucleus | 35.34 | 39.37 |
| TraesCS4B01G070800.1 | Wheat | nucleus | 34.84 | 38.81 |
| HORVU4Hr1G011910.1 | Barley | cytosol, plastid | 39.7 | 38.73 |
| HORVU4Hr1G011770.1 | Barley | nucleus | 34.34 | 38.17 |
| Os03t0626100-01 | Rice | nucleus | 35.18 | 36.84 |
| CDX79439 | Canola | nucleus | 15.75 | 28.75 |
| CDY68345 | Canola | cytosol | 20.44 | 27.79 |
| CDX84781 | Canola | nucleus | 25.63 | 27.62 |
| CDY47704 | Canola | nucleus | 25.63 | 27.42 |
| CDY10162 | Canola | nucleus | 25.46 | 27.39 |
| CDY16406 | Canola | nucleus | 24.96 | 27.24 |
| CDY63791 | Canola | nucleus | 24.96 | 26.94 |
| CDY23938 | Canola | nucleus | 25.13 | 26.93 |
| CDX86547 | Canola | nucleus | 24.96 | 26.9 |
| CDY19083 | Canola | nucleus | 24.96 | 26.85 |
| CDY57807 | Canola | nucleus | 25.29 | 26.77 |
| CDY15392 | Canola | nucleus | 24.79 | 26.57 |
| CDY68344 | Canola | nucleus | 22.11 | 26.51 |
| CDX84759 | Canola | nucleus | 22.95 | 26.3 |
| CDX91196 | Canola | nucleus | 22.28 | 26.13 |
| CDX70415 | Canola | nucleus | 22.95 | 26.1 |
| CDX78438 | Canola | nucleus | 21.61 | 26.06 |
| CDY61443 | Canola | nucleus | 23.12 | 25.56 |
| CDY15374 | Canola | nucleus | 23.62 | 24.61 |
| CDY42068 | Canola | nucleus | 18.26 | 23.85 |
| CDY15373 | Canola | nucleus | 21.78 | 23.77 |
| CDX99147 | Canola | nucleus | 13.07 | 22.03 |
| CDY34512 | Canola | cytosol, nucleus, plastid | 10.22 | 20.75 |
| CDY47702 | Canola | cytosol | 18.09 | 20.73 |
| CDX84438 | Canola | cytosol | 12.56 | 20.38 |
| CDY34490 | Canola | cytosol | 4.19 | 20.33 |
| CDY10159 | Canola | cytosol | 17.92 | 20.27 |
| CDX99146 | Canola | nucleus | 14.74 | 19.73 |
| CDY40734 | Canola | nucleus | 14.74 | 18.45 |
| CDX79440 | Canola | cytosol | 5.19 | 18.13 |
| CDY44786 | Canola | nucleus | 14.57 | 18.05 |
| CDY41533 | Canola | nucleus | 15.58 | 17.51 |
| CDY39850 | Canola | nucleus | 12.9 | 17.26 |
| CDY31353 | Canola | nucleus | 12.23 | 16.4 |
| CDY21562 | Canola | nucleus | 17.09 | 15.36 |
| CDX69926 | Canola | cytosol, mitochondrion, nucleus | 16.25 | 14.46 |
| CDX84439 | Canola | nucleus | 15.58 | 14.18 |
| CDY41534 | Canola | nucleus | 3.69 | 11.89 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | GO:A0A078BYQ8 | EnsemblPlants:CDX69049 | ProteinID:CDX69049 |
| ProteinID:CDX69049.1 | ncoils:Coil | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00130812001 | InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF01485 |
| PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF150 | SMART:SM00647 | SUPFAM:SSF57850 | UniPathway:UPA00143 |
| UniParc:UPI0004EB4D50 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
BnaC01g04040D
Coordinates
chrLK031789:+:2645637..2649002
Molecular Weight (calculated)
68309.2 Da
IEP (calculated)
5.437
GRAVY (calculated)
-0.622
Length
597 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDYYTADEE DCYYSSDHDE SLGGIDNDDS EFHAASSKKS TTQVITQESL LAAQREDLLR VMELLSIKEH HARTLLIHYQ WDIEKLISVF VEKGKDSLFS
101: GAGVTVFDCR YGGDSSSLPS SSSNMSCDVC LEDVVADLMK RMDCGHCFCN DCWTEHFTVQ INEGQSKRIR CMAHKCNAIC DEDVVRSLVS KKRPDLAEKF
201: DRFLVESYIE DNKMVKWCPS TPHCGNAIRA EDDKLCEVEC SCGLQFCFSC MCQAHSPCSC LMWELWRKKC RDESETVNWI TVHTKLCPKC YKPVEKNGGC
301: NLVRCICGQY FCWLCGGATG KEHTYRSIAG HSCGRYEDDK ERQMERAKRD LDRYTHYHHR YKAHTDSSKL EDKLRDTILE KVSNSEKKEL KLKDFTWVTN
401: GLNRLFRSRR ILSYSYAFAY YMFGEELFKD EMSSSEREMK KNLFEDQQQQ LEGNVEKLSQ LLEEPFDDFS DDKVMDVRIH VINLSVAVDS LCKKMYECIE
501: NDLLGSLQSG IHNIAPYSSK GIEQAAEFHA SWSSSKPLDS SGTSGETSRP EKASGSRDSE DMVCSSSKKR PRREGSFTNS KVTLLDLNLP ADFIDQN
101: GAGVTVFDCR YGGDSSSLPS SSSNMSCDVC LEDVVADLMK RMDCGHCFCN DCWTEHFTVQ INEGQSKRIR CMAHKCNAIC DEDVVRSLVS KKRPDLAEKF
201: DRFLVESYIE DNKMVKWCPS TPHCGNAIRA EDDKLCEVEC SCGLQFCFSC MCQAHSPCSC LMWELWRKKC RDESETVNWI TVHTKLCPKC YKPVEKNGGC
301: NLVRCICGQY FCWLCGGATG KEHTYRSIAG HSCGRYEDDK ERQMERAKRD LDRYTHYHHR YKAHTDSSKL EDKLRDTILE KVSNSEKKEL KLKDFTWVTN
401: GLNRLFRSRR ILSYSYAFAY YMFGEELFKD EMSSSEREMK KNLFEDQQQQ LEGNVEKLSQ LLEEPFDDFS DDKVMDVRIH VINLSVAVDS LCKKMYECIE
501: NDLLGSLQSG IHNIAPYSSK GIEQAAEFHA SWSSSKPLDS SGTSGETSRP EKASGSRDSE DMVCSSSKKR PRREGSFTNS KVTLLDLNLP ADFIDQN
001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN
Arabidopsis Description
ARI1Probable E3 ubiquitin-protein ligase ARI1 [Source:UniProtKB/Swiss-Prot;Acc:Q949V6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.