CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038659.1-P	Field mustard	nucleus	71.49	93.61
CDY41533	Canola	nucleus	62.35	77.02
CDY41534	Canola	nucleus	18.6	65.95
CDY31353	Canola	nucleus	39.48	58.2
CDY39850	Canola	nucleus	39.48	58.07
CDX84438	Canola	cytosol	30.64	54.62
AT5G63760.2	Thale cress	nucleus	35.06	50.88
AT5G63750.1	Thale cress	nucleus	41.31	50.56
AT5G63730.1	Thale cress	cytosol	38.57	50.0
CDX99147	Canola	nucleus	22.1	40.96
CDX99146	Canola	nucleus	26.37	38.79
CDY40734	Canola	nucleus	26.22	36.06
CDY44786	Canola	nucleus	25.46	34.65
CDY21562	Canola	nucleus	27.9	27.56
CDY68345	Canola	cytosol	17.68	26.42
CDX69926	Canola	cytosol, mitochondrion, nucleus	26.52	25.93
CDY68344	Canola	nucleus	18.45	24.3
CDX84759	Canola	nucleus	19.21	24.18
CDY16406	Canola	nucleus	20.12	24.13
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.75	24.02
CDX79440	Canola	cytosol	6.25	23.98
CDX70415	Canola	nucleus	19.05	23.81
CDY57807	Canola	nucleus	20.43	23.76
CDY10162	Canola	nucleus	19.97	23.6
CDX79439	Canola	nucleus	11.74	23.55
CDY15392	Canola	nucleus	19.82	23.34
CDY63791	Canola	nucleus	19.66	23.33
CDY47704	Canola	nucleus	19.82	23.3
CDX84781	Canola	nucleus	19.66	23.29
CDX86547	Canola	nucleus	19.66	23.29
CDY19083	Canola	nucleus	19.66	23.24
CDY23938	Canola	nucleus	19.66	23.16
CDY61443	Canola	nucleus	19.05	23.15
CDY15373	Canola	nucleus	19.21	23.03
CDX91196	Canola	nucleus	17.68	22.79
CDY42068	Canola	nucleus	15.85	22.76
CDX78438	Canola	nucleus	16.92	22.42
CDY47702	Canola	cytosol	17.53	22.07
KRH24184	Soybean	nucleus	17.53	22.03
CDY15374	Canola	nucleus	19.21	21.99
CDY10159	Canola	cytosol	17.23	21.4
CDY34490	Canola	cytosol	3.66	19.51
CDY00148	Canola	nucleus	13.41	18.18
CDY49768	Canola	nucleus	13.26	18.12
CDY03991	Canola	nucleus	13.26	17.98
CDY20037	Canola	nucleus	14.33	17.94
CDY34512	Canola	cytosol, nucleus, plastid	7.62	17.01
CDX71262	Canola	nucleus	14.79	16.7
CDY49559	Canola	nucleus	14.79	16.67
CDX75425	Canola	nucleus	14.18	15.74
CDX69049	Canola	nucleus	14.18	15.58

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	GO:A0A078D7U6	EnsemblPlants:CDX84439	ProteinID:CDX84439
ProteinID:CDX84439.1	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00141645001	InterPro:IBR_dom	InterPro:IPR001876	InterPro:IPR013083	PFAM:PF01485	ScanProsite:PS01358
PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	SMART:SM00647	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EEA31F
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	SEG:seg	:	:	:

Description

BnaC03g50610D

Coordinates

chrLK031837:-:1184414..1189831

Molecular Weight (calculated)

75177.1 Da

IEP (calculated)

4.632

GRAVY (calculated)

-0.465

Length

656 amino acids

Sequence
(BLAST)

001: MEDDLQRPYF VCTRDDLKEK MNKQINDISE IFCVSNSDVT ALLMKLRWNS QLLSERLCQE NNKLSTESGF VTDSNQDLSH SDSSCDDVDD KVSTPFCSHQ
101: FSINYWSKYL EKNKKKYTIS CPLQGCPAEV EWDAIENLTV RKKNSFLILF NLNMDDDDLQ RPYSVCTRDD LKERITKQID VISEIFCVST SDATVLLMKL
201: RWNSQLLSER LSQENKKLLT ESGLKPVVVT DSNQDLSDSS CDEFYEFFDD VDDDDVKVST PFCSHKFSTT YWSKYLDKNF FSVEKTLDTI SCPHQDCGAA
301: VGRDTIEKLT VKDKNRYDEY VLRSYLDTSK RQVKQCPAQG CSYFIEFHKG TDAEEYGLNV VCLCGHTFCC RCSLETHRPV TCNNASDWLS RDLQKLSEAS
401: DKSLSFLWIE ANTEPCPHCL SPVEIGLGSL DSKFVPCGYC SGSFCWDCMH SEESHKTESG TYGDCLEPVE QDPLWNVEVV DTSCLDRWEA CEVSLVEARS
501: ELQAFKESDN TSEEYIRIVR EGLMLIVQCR QFLKWTCVYE HIHLEYEASK KEFLRFLQDY ANTLVKSYAE TLKEETGKGL SAAQLVCSRS NIPGVTSSIG
601: NYFYNFSKAL KDGLDAVKVK HYDDFAPCWL CDRCSYANTW LHKACQMCCE SPVVNK

Best Arabidopsis Sequence Match ( AT5G63750.1 )
(BLAST)

001: MENNREGPYS VLTRDQLKGN MKKQIAEISE IFSLSKPDAT VLLMFLRWDS HEVSEFLVEN NEKVLSESGL KPVVVDPNQD LYKISSCGIC FKTCDDGDYL
101: ISTPFCSHMF CKSCWRKYLE KNFYLVEKTQ TRISCPHGAC QAAVGPDTIQ KLTVCDQEMY VEYILRSYIE GNKVLEIKYC PAQDCNYVIE FHQKNHDGAD
201: QEDYGFNVVC LCGHIFCWRC MLESHKPVTC NNASDWLFRD LNSLSKESGE KPLSLSSFET REKTYPLSSI KATKKVCPHC LRPADLGTKQ YLRFLTCACN
301: GRFCWKCMQP EEAHKTESGF YKFCNVSMTF EGRAPKTLEG RAEPENSCVG LWKASEVSLK QAKSDLQAFE ESNIKNPSDL TEKDFTIIRK GLMLIVQCRQ
401: VLKWSCVYDY LHAEYEMSKR EYLRFLQADA TSLVESFSKT LNEEIGRASS ATYENFCCVK HKVTIETSNI GNYFYHFIKT LQEGLDDVKV KSYDDYGGLF
501: WLCDRCTYGN TWFHKECLMC SDDIAARVDL SDMSLN

Arabidopsis Description

ARI13Probable E3 ubiquitin-protein ligase ARI13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.