CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	41.57	42.38
KRH24651	Soybean	nucleus	45.59	40.61
KRH29654	Soybean	nucleus	45.21	40.27
KRH23186	Soybean	nucleus	45.02	39.9
KRH10154	Soybean	nucleus	44.83	39.73
Bra015460.1-P	Field mustard	nucleus	30.65	30.77
CDY47702	Canola	cytosol	30.27	30.33
CDY10159	Canola	cytosol	30.46	30.11
AT1G05880.2	Thale cress	cytosol	28.16	29.64
CDX99147	Canola	nucleus	19.35	28.53
CDX99146	Canola	nucleus	23.95	28.03
Bra018221.1-P	Field mustard	cytosol	23.18	26.95
CDX84438	Canola	cytosol	18.39	26.09
AT5G08730.1	Thale cress	cytosol	22.8	23.8
Bra038658.1-P	Field mustard	nucleus	19.54	23.61
AT5G63750.1	Thale cress	nucleus	23.18	22.57
Bra028646.1-P	Field mustard	nucleus	20.5	22.53
CDY40734	Canola	nucleus	20.5	22.43
CDY44786	Canola	nucleus	20.69	22.41
AT5G63760.2	Thale cress	nucleus	19.35	22.35
KRH24517	Soybean	nucleus	24.71	22.24
Bra038659.1-P	Field mustard	nucleus	21.26	22.16
CDY31353	Canola	nucleus	18.77	22.02
Bra029204.1-P	Field mustard	nucleus	18.77	22.02
KRH29521	Soybean	nucleus	24.33	21.9
CDY39850	Canola	nucleus	18.58	21.75
AT5G63730.1	Thale cress	cytosol	21.07	21.74
CDY41533	Canola	nucleus	21.84	21.47
Bra038276.1-P	Field mustard	cytosol	22.8	19.73
CDX84439	Canola	nucleus	22.03	17.53
CDY41534	Canola	nucleus	6.13	17.3
Bra038660.1-P	Field mustard	cytosol	6.13	17.3
Bra009365.1-P	Field mustard	cytosol	21.84	17.04
CDX69926	Canola	cytosol, mitochondrion, nucleus	21.84	16.99
CDY21562	Canola	nucleus	21.46	16.87

Protein Annotations

Gene3D:1.20.120.1750	EntrezGene:100801350	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EMBL:ACUP02007172	InterPro:E3_UB_ligase_RBR
EnsemblPlantsGene:GLYMA_12G027000	GO:GO:0000151	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0032436
GO:GO:0042787	GO:GO:0046872	GO:GO:0061630	UniProt:I1LPJ5	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlants:KRH24184	ProteinID:KRH24184	ProteinID:KRH24184.1	PFAM:PF01485	PFscan:PS50089
PANTHER:PTHR11685	PANTHER:PTHR11685:SF211	SMART:SM00647	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000233D486
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:1945797..1947365

Molecular Weight (calculated)

61139.1 Da

IEP (calculated)

7.569

GRAVY (calculated)

-0.525

Length

522 amino acids

Sequence
(BLAST)

001: MEKEDETTHE DDWIKGVEMN SIDHKITSKE QQHYTVLSES DIKRHQDADI KQVSCVLLIS IVFSCLLLVH HEWSVLKVQE VWFDDEERVR KAVGLLKQHK
101: PRVGFPNSKT LTCEICLDVV LCDKVRSASC DHLYCIDCWK KYVDTSINDG PNKCLKLRCP KPFCDAAVGG DMIRELASES QRNKYDQFLF RSYVENNKKV
201: KWCPAPDCGY AVSYEADGVR SNSDVTCLCY HSFCWSCGEE AHSPVDCEIA KHWIMKNDYE SSENSAWILA NTKPCPKCKK PIEKIDGYVH MECMCGFQFC
301: WLCLRKWSNC CYNCIHFPYK DIYKKEVKRN MVSDYLDDCT HYFESWTRTN LIRKDALNHL KHLMNGGHTK RLSMLYQRSE DDFEFIEAAW QQVIECIRVL
401: KWIYTYRFYL PKSEQAKIEF LGYSQREAKT VLETLCYCTD KELSEFLHAS EPKNTFDDFR LKLMKLTNVS KTYFENLVRA LENGLTNVQV KKYGVSGLKR
501: RLREIGESST GMKKRNRNIN LN

Best Arabidopsis Sequence Match ( AT1G05890.1 )
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN

Arabidopsis Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.