Factsheet for Bra038276.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018221.1-P	Field mustard	cytosol	73.13	98.22
CDX99146	Canola	nucleus	69.98	94.62
AT5G08730.1	Thale cress	cytosol	41.46	50.0
Bra028646.1-P	Field mustard	nucleus	34.0	43.16
Bra038658.1-P	Field mustard	nucleus	26.7	37.27
Bra038659.1-P	Field mustard	nucleus	28.52	34.33
Bra009365.1-P	Field mustard	cytosol	37.65	33.93
Bra029204.1-P	Field mustard	nucleus	23.05	31.24
Bra021726.1-P	Field mustard	nucleus	22.06	26.49
Bra021742.1-P	Field mustard	nucleus	21.72	26.31
Bra005642.1-P	Field mustard	nucleus	22.06	26.08
Bra006112.1-P	Field mustard	nucleus	22.55	25.47
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	21.56	25.39
Bra022865.1-P	Field mustard	nucleus	21.06	24.38
Bra022479.1-P	Field mustard	nucleus	22.55	24.11
Bra022845.1-P	Field mustard	nucleus	22.06	24.05
Bra015463.1-P	Field mustard	nucleus	22.22	24.01
KRH24184	Soybean	nucleus	19.73	22.8
Bra038660.1-P	Field mustard	cytosol	6.97	22.7
Bra023338.1-P	Field mustard	nucleus	20.73	22.64
Bra015460.1-P	Field mustard	nucleus	19.24	22.31
Bra039068.1-P	Field mustard	nucleus	16.09	18.51
Bra001960.1-P	Field mustard	nucleus	16.25	16.84
Bra033024.1-P	Field mustard	nucleus	14.26	16.35
Bra011524.1-P	Field mustard	nucleus	15.09	15.4

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra038276	EnsemblPlants:Bra038276.1	EnsemblPlants:Bra038276.1-P
ncoils:Coil	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR013083	UniProt:M4FB10	PFAM:PF01485
PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000253EE95	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT5G08730 (E=2e-126) | IBR domain-containing protein

Coordinates

chrA06:-:11349337..11351800

Molecular Weight (calculated)

68967.2 Da

IEP (calculated)

5.660

GRAVY (calculated)

-0.548

Length

603 amino acids

Sequence
(BLAST)

001: METDGQSLYA VLTTNEVGEK MTREINQISE VFLLSKSDAT LILISLRWNS FKASDRLGDD KEKLLSDLGL VKVFSSCQEN DSVSSFAGQE NLVSTPFCSH
101: KFSETCWRSH LSNLLTEEEE RVVLCPNPDC VAPVGPDTIE KLTEPAVKMM YNRYVLGSFV EANKESIKWC PAPGCEYAIE LHEDLLEDDD LDFGVVCLCG
201: HTFCWSCTLE SHRPVTCKEA SVWSSSTLDT LKSNAWLLEN TKRCPNCNCH VQRTDDPVLR MITCICSCSF CWRCLLSEEE HNGNWNCVEL LFQLSMKQVD
301: DSSYLRLWET CLEEYENSKS DLKAIEENGV PRLTDNSSFN EQDVDAVKEA TLLMVQCRLV LKWSCAYEYF IAMYQSPKTQ YVKHLRGEAR KTLLRHKATQ
401: EELMNKALTS GYFSSFKVEL SNSSTITGNY FHEYVKTLES GFPEIQMLPL GEPPLATLQT QDRFEERDGP EYLRLKHLNS NTRHLTANQK TSTRGREEPS
501: VSFTARDRHR HDIYHPRADL ITEDTQQKHT TSSHFTSLHP QLHHHRSSLT DNVTDLEADH KTKERRERSS PSLILRELQL VTCSTGEPKN PHNSRLIKDL
601: THG

Best Arabidopsis Sequence Match ( AT5G08730.1 )
(BLAST)

001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE

Arabidopsis Description

ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.