Factsheet for Bra023338.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61443	Canola	nucleus	96.2	98.33
Bra006112.1-P	Field mustard	nucleus	63.04	65.17
Bra021726.1-P	Field mustard	nucleus	56.34	61.95
Bra015463.1-P	Field mustard	nucleus	62.5	61.83
Bra022845.1-P	Field mustard	nucleus	60.69	60.58
Bra021742.1-P	Field mustard	nucleus	52.54	58.23
Solyc06g073340.2.1	Tomato	nucleus	56.88	57.09
PGSC0003DMT400069483	Potato	nucleus	57.07	56.76
GSMUA_Achr9P07970_001	Banana	nucleus	56.16	56.16
KRH24651	Soybean	nucleus	59.06	55.63
KRH29654	Soybean	nucleus	58.7	55.29
Bra005642.1-P	Field mustard	nucleus	50.72	54.9
VIT_05s0102g00160.t01	Wine grape	nucleus	58.33	54.86
KRH23186	Soybean	nucleus	58.51	54.84
KRH10154	Soybean	nucleus	58.51	54.84
GSMUA_Achr6P28580_001	Banana	nucleus	55.43	54.64
Os04t0492100-01	Rice	nucleus	46.38	54.24
GSMUA_Achr8P28870_001	Banana	nucleus	57.43	54.0
Bra022479.1-P	Field mustard	nucleus	54.89	53.72
EES11042	Sorghum	nucleus	57.07	53.48
GSMUA_Achr3P16920_001	Banana	nucleus	56.7	53.32
Zm00001d003207_P001	Maize	nucleus	56.88	53.31
Bra022865.1-P	Field mustard	nucleus	50.18	53.17
Zm00001d025750_P011	Maize	extracellular	56.7	53.14
TraesCS2B01G368000.2	Wheat	nucleus	56.52	52.97
TraesCS2D01G348000.2	Wheat	nucleus	56.34	52.8
TraesCS2A01G349600.1	Wheat	nucleus	56.34	52.8
HORVU6Hr1G055260.4	Barley	nucleus	55.98	52.46
TraesCS6B01G245900.2	Wheat	nucleus	55.62	52.3
TraesCS6D01G198600.5	Wheat	nucleus	55.43	51.95
TraesCS6A01G216900.1	Wheat	nucleus	55.43	51.95
HORVU2Hr1G085060.3	Barley	cytosol	53.44	44.1
Zm00001d046141_P001	Maize	cytosol	21.01	40.85
Bra015460.1-P	Field mustard	nucleus	33.33	35.38
Bra018221.1-P	Field mustard	cytosol	22.64	27.84
Bra039068.1-P	Field mustard	nucleus	25.0	26.34
Bra001960.1-P	Field mustard	nucleus	26.81	25.43
Bra038659.1-P	Field mustard	nucleus	22.83	25.15
Bra038658.1-P	Field mustard	nucleus	19.57	25.0
Bra033024.1-P	Field mustard	nucleus	23.37	24.52
Bra028646.1-P	Field mustard	nucleus	20.65	24.0
Bra011524.1-P	Field mustard	nucleus	25.54	23.86
Bra029204.1-P	Field mustard	nucleus	17.75	22.02
Bra038276.1-P	Field mustard	cytosol	22.64	20.73
Bra038660.1-P	Field mustard	cytosol	6.88	20.54
Bra009365.1-P	Field mustard	cytosol	22.1	18.24

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra023338	EnsemblPlants:Bra023338.1	EnsemblPlants:Bra023338.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4E3I6	PFAM:PF01485
PFAM:PF13445	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	SMART:SM00647
SUPFAM:SSF57850	UniParc:UPI000254339A	InterPro:Znf-RING_LisH	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

AT1G05890 (E=2e-198) | zinc finger protein-related

Coordinates

chrA02:-:2922043..2923701

Molecular Weight (calculated)

63467.5 Da

IEP (calculated)

5.567

GRAVY (calculated)

-0.668

Length

552 amino acids

Sequence
(BLAST)

001: MYSDNDMLDA YDEESGEYDL YSDVDDEHDP HGGEDDSDYI LEEVVDDSIT HGSQINYVVL KEEDIRKRQE DDIKQLSTVL SITNAEASVL LLHYRWNVSK
101: LTDEWFADEE KVRRTVGVLE GGGGSVVIGN HRKVKCGICF DKFRRKKIVP VVCGHTFCST CWNGYITTAI NDGSGCLMQK CPEPSCHIAI GRDLVEKVVS
201: EEDLRKYDRY FLRSYIEESK KMKWCPAPGC EGAVDFSSSG TGINYDVLCS CSHRFCWNCN EDAHSPVDCD MVSQWIIKNS AEAENTTWIL ANSKACPKCK
301: RPIEKNHGCM HMTCGQPCKH QFCWLCLGAW KDHGGRTGGF YACNKYEEDK KEGLYDDSEK KRQMAKSSLE RYTHYYERWA SNEKSRGKAF GDLQVFLTEK
401: IAKLSVVQCI PETQLTFITD AWLQIIECRR VLKWTYAYGY YLPESEREKR CFFEYVQGEA ESGLERLHKC VETEAEVFQD AEERSELGFT AFREKLSNLT
501: SVTKRHFETL VKALENGLSD VESQAACTKE TESFKREIKS KETKSKKRRR ER

Best Arabidopsis Sequence Match ( AT2G31510.1 )
(BLAST)

001: MDSEEDMLDA HDMESGEDDF YSGGTDDCND SDDGEPDYGF VEEDADDSAM IASHRSQKNF CVLREEDIRR HQMDNIERVS VVLSITEVEA SILLRHFHWS
101: VGRVHDEWFA DEERVRKTVG ILESHVVPPS DDSELTCGIC FDSYPPEKIA SVSCGHPFCT TCWTGYISTT INDGPGCLML RCPDPSCLAA VGHDMVDKLA
201: SEDEKEKYNR YFLRSYIEDN RKMKWCPAPG CDFAIDFVAG SGNYDVSCLC SFSFCWNCTE EAHRPVDCST VSKWILKNSA ESENMNWILA NSKPCPRCKR
301: PIEKNQGCMH MTCTPPCKYE FCWLCLGAWM DHGERTGGFY ACNRYEVAKQ EGQYDETERR REMAKNSLER YTHYYERWAS NQTSRQKAMA DLQQAQMQNL
401: EKLSDKQCTP ESQLKFILEA WLQIIECRRV LKWTYAYGYY LPEHEHAKRQ FFEYLQGEAE SGLERLHQCV EKDLVQFLIA EGPSKDFNDF RTKLAGLTSV
501: TKNYFENLVK ALENGLADVD SHAACSSKST SSKSTGCSSK TRGKGKGSSR TGGSSRNPDD NL

Arabidopsis Description

ARI7Probable E3 ubiquitin-protein ligase ARI7 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.