Factsheet for TraesCS6A01G216900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G198600.5	Wheat	nucleus	99.66	99.66
TraesCS6B01G245900.2	Wheat	nucleus	98.64	98.98
HORVU6Hr1G055260.4	Barley	nucleus	97.62	97.62
EES11042	Sorghum	nucleus	86.08	86.08
TraesCS2A01G349600.1	Wheat	nucleus	85.4	85.4
Os04t0492100-01	Rice	nucleus	68.42	85.38
Zm00001d003207_P001	Maize	nucleus	85.06	85.06
Zm00001d025750_P011	Maize	extracellular	84.38	84.38
GSMUA_Achr8P28870_001	Banana	nucleus	77.42	77.68
GSMUA_Achr6P28580_001	Banana	nucleus	72.5	76.25
GSMUA_Achr9P07970_001	Banana	nucleus	71.14	75.91
GSMUA_Achr3P16920_001	Banana	nucleus	74.87	75.13
VIT_05s0102g00160.t01	Wine grape	nucleus	73.68	73.94
Bra021726.1-P	Field mustard	nucleus	62.82	73.71
Solyc06g073340.2.1	Tomato	nucleus	66.72	71.45
KRH23186	Soybean	nucleus	71.31	71.31
Bra022845.1-P	Field mustard	nucleus	66.89	71.25
CDY19083	Canola	nucleus	67.06	71.17
KRH10154	Soybean	nucleus	71.14	71.14
CDX84781	Canola	nucleus	66.89	71.12
KRH29654	Soybean	nucleus	70.63	70.99
PGSC0003DMT400069483	Potato	nucleus	66.72	70.81
CDY15392	Canola	nucleus	66.72	70.56
KRH24651	Soybean	nucleus	70.12	70.48
CDY23938	Canola	nucleus	66.04	69.84
AT2G31510.1	Thale cress	nucleus	66.55	69.75
Bra015463.1-P	Field mustard	nucleus	64.69	68.28
CDY47704	Canola	nucleus	64.52	68.1
CDY10162	Canola	nucleus	64.01	67.93
CDX86547	Canola	nucleus	62.99	66.97
CDY63791	Canola	nucleus	62.65	66.73
AT1G05890.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	62.14	61.62
CDY34490	Canola	cytosol	12.39	59.35
CDX79440	Canola	cytosol	17.15	59.06
CDX70415	Canola	nucleus	52.29	58.67
CDY68344	Canola	nucleus	48.9	57.83
Bra006112.1-P	Field mustard	nucleus	52.29	57.68
Bra021742.1-P	Field mustard	nucleus	48.56	57.43
TraesCS5A01G298200.1	Wheat	nucleus	54.5	57.32
TraesCS7A01G267200.4	Wheat	nucleus	58.4	57.05
CDX78438	Canola	nucleus	47.71	56.77
CDY68345	Canola	cytosol	42.27	56.72
CDX91196	Canola	nucleus	48.22	55.8
Bra023338.1-P	Field mustard	nucleus	51.95	55.43
AT2G31780.1	Thale cress	nucleus	41.6	55.3
CDY61443	Canola	nucleus	50.25	54.81
Zm00001d046141_P001	Maize	cytosol	26.32	54.58
Bra022865.1-P	Field mustard	nucleus	47.71	53.93
CDX84759	Canola	nucleus	47.71	53.93
Bra005642.1-P	Field mustard	nucleus	46.52	53.73
AT2G31760.1	Thale cress	nucleus	46.18	52.92
CDY15373	Canola	nucleus	49.07	52.83
CDX79439	Canola	nucleus	28.86	51.99
AT2G31770.1	Thale cress	nucleus	47.88	51.93
CDY42068	Canola	nucleus	40.07	51.64
CDY15374	Canola	nucleus	49.24	50.61
CDY34512	Canola	cytosol, nucleus, plastid	23.77	47.62
TraesCS4A01G376800.1	Wheat	nucleus	35.14	42.16
TraesCS5A01G361400.1	Wheat	nucleus	38.37	38.24
TraesCS6A01G417200.1	Wheat	nucleus	35.65	36.97
TraesCS4A01G061500.1	Wheat	nucleus	25.98	24.68
TraesCS4A01G243200.1	Wheat	nucleus	22.41	24.09
TraesCS4A01G244200.1	Wheat	nucleus	21.56	23.69

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6A01G216900
EnsemblPlants:TraesCS6A01G216900.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16623	SEG:seg	:

Description

No Description!

Coordinates

chr6A:-:399212639..399224010

Molecular Weight (calculated)

66092.5 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.687

Length

589 amino acids

Sequence
(BLAST)

001: MDSEDDTRDS ADEDFYSGGE AGLALSDDGD ADYDFADRDS DDSDDLISHR QQQNYSVLSE TDIKQHQADD MNRVSTVLSI SKSEACALLR SYNWSVSKVH
101: DEWFVDEARV RTAVGLPEKQ NEMPNERELT CGICFESCPR ESMGAASCGH PFCGVCWRGY ISTAINDGPG CLMLRCPDPS CSAAVGQDMV NLFASDEDKG
201: KYERYLCRSY IEDNRKTKWC PAPGCEYAVE FVVGSGSYDV SCGCSYGFCW NCTEEAHRPV DCSTVSKWIL KNSAESENMN WILANSKPCP KCKRPIEKNQ
301: GCMHITCTPP CKFEFCWLCL GPWSDHGERT GGFYACNRYE AARQEGAFDD SERRREMAKN SLERYTHYYE RWAANQSSRQ KALGDLQSLQ NDKLEKLSDI
401: QSQPESQLKF IIEAWLQIVE CRRVLKWTYA YGYYLPDHEH AKRQFFEYVQ GEAESGLERL HQCAEKELQI YLDADCPSKD FNDFRTKLAG LTSVTRNYFE
501: NLVRALESGL NDVGAHSGQG ACSKAVSSKN LGGKSKSGKN KAPVGASKSG SSTRGMDDGN IWACDQCTFA NPRSARSCQR HMAHEVTGL

Best Arabidopsis Sequence Match ( AT2G31510.3 )
(BLAST)

001: MDNIERVSVV LSITEVEASI LLRHFHWSVG RVHDEWFADE ERVRKTVGIL ESHVVPPSDD SELTCGICFD SYPPEKIASV SCGHPFCTTC WTGYISTTIN
101: DGPGCLMLRC PDPSCLAAVG HDMVDKLASE DEKEKYNRYF LRSYIEDNRK MKWCPAPGCD FAIDFVAGSG NYDVSCLCSF SFCWNCTEEA HRPVDCSTVS
201: KWILKNSAES ENMNWILANS KPCPRCKRPI EKNQGCMHMT CTPPCKYEFC WLCLGAWMDH GERTGGFYAC NRYEVAKQEG QYDETERRRE MAKNSLERYT
301: HYYERWASNQ TSRQKAMADL QQAQMQNLEK LSDKQCTPES QLKFILEAWL QIIECRRVLK WTYAYGYYLP EHEHAKRQFF EYLQGEAESG LERLHQCVEK
401: DLVQFLIAEG PSKDFNDFRT KLAGLTSVTK NYFENLVKAL ENGLADVDSH AACSSKSTSS KSTGCSSKTR GKGKGSSRTG GSSRNPDDNL

Arabidopsis Description

ARI7Probable E3 ubiquitin-protein ligase ARI7 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.