CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34490	Canola	cytosol	29.82	41.46
CDY34512	Canola	cytosol, nucleus, plastid	69.59	40.48
CDX84759	Canola	nucleus	97.66	32.05
CDY68345	Canola	cytosol	73.68	28.7
CDY42068	Canola	nucleus	69.59	26.04
CDY68344	Canola	nucleus	67.84	23.29
Os04t0492100-01	Rice	nucleus	61.4	22.25
CDY15374	Canola	nucleus	73.68	21.99
AT2G31760.1	Thale cress	nucleus	64.33	21.4
AT2G31770.1	Thale cress	nucleus	67.84	21.36
CDY15373	Canola	nucleus	67.25	21.02
CDY10162	Canola	nucleus	67.25	20.72
CDY19083	Canola	nucleus	66.67	20.54
CDY15392	Canola	nucleus	66.67	20.47
CDX84781	Canola	nucleus	66.08	20.4
CDY47704	Canola	nucleus	66.08	20.25
CDY23938	Canola	nucleus	65.5	20.11
CDY63791	Canola	nucleus	63.74	19.71
CDX86547	Canola	nucleus	63.74	19.68
CDY41534	Canola	nucleus	21.05	19.46
PGSC0003DMT400069483	Potato	nucleus	62.57	19.28
Solyc06g073340.2.1	Tomato	nucleus	61.99	19.27
KRH24651	Soybean	nucleus	65.5	19.11
KRH23186	Soybean	nucleus	65.5	19.02
KRH29654	Soybean	nucleus	64.91	18.94
KRH10154	Soybean	nucleus	64.91	18.85
CDX78438	Canola	nucleus	53.8	18.59
Zm00001d003207_P001	Maize	nucleus	61.99	18.0
CDY57807	Canola	nucleus	59.06	17.91
VIT_05s0102g00160.t01	Wine grape	nucleus	61.4	17.89
CDX91196	Canola	nucleus	53.22	17.88
EES11042	Sorghum	nucleus	61.4	17.83
Zm00001d025750_P011	Maize	extracellular	61.4	17.83
GSMUA_Achr8P28870_001	Banana	nucleus	60.82	17.72
TraesCS2D01G348000.2	Wheat	nucleus	60.82	17.66
TraesCS2A01G349600.1	Wheat	nucleus	60.82	17.66
TraesCS2B01G368000.2	Wheat	nucleus	60.82	17.66
CDX70415	Canola	nucleus	53.8	17.52
GSMUA_Achr9P07970_001	Banana	nucleus	56.14	17.39
TraesCS6B01G245900.2	Wheat	nucleus	59.06	17.21
CDY16406	Canola	nucleus	54.97	17.18
TraesCS6A01G216900.1	Wheat	nucleus	59.06	17.15
HORVU6Hr1G055260.4	Barley	nucleus	59.06	17.15
TraesCS6D01G198600.5	Wheat	nucleus	59.06	17.15
GSMUA_Achr6P28580_001	Banana	nucleus	56.14	17.14
CDY61443	Canola	nucleus	53.22	16.85
GSMUA_Achr3P16920_001	Banana	nucleus	57.31	16.7
HORVU2Hr1G085060.3	Barley	cytosol	60.82	15.55
CDY10159	Canola	cytosol	38.6	12.5
CDY47702	Canola	cytosol	38.01	12.48
AT2G31780.1	Thale cress	nucleus	32.16	12.42
CDX99146	Canola	nucleus	23.39	8.97
CDY40734	Canola	nucleus	23.98	8.6
CDY44786	Canola	nucleus	23.98	8.51
Zm00001d046141_P001	Maize	cytosol	13.45	8.1
CDX84438	Canola	cytosol	16.96	7.88
CDY41533	Canola	nucleus	23.98	7.72
CDY31353	Canola	nucleus	19.3	7.42
CDY39850	Canola	nucleus	19.3	7.4
CDX84439	Canola	nucleus	23.98	6.25
CDX69926	Canola	cytosol, mitochondrion, nucleus	23.98	6.11
CDY21562	Canola	nucleus	22.81	5.87
CDY00148	Canola	nucleus	16.37	5.79
CDY49559	Canola	nucleus	19.3	5.67
CDY20037	Canola	nucleus	16.37	5.34
CDX71262	Canola	nucleus	18.13	5.34
CDX75425	Canola	nucleus	18.13	5.25
CDX69049	Canola	nucleus	18.13	5.19
CDY49768	Canola	nucleus	14.04	5.0
CDY03991	Canola	nucleus	12.87	4.55
CDX99147	Canola	nucleus	5.26	2.54
CDX79439	Canola	nucleus	2.92	1.53

Protein Annotations

EnsemblPlants:CDX79440	EnsemblPlantsGene:GSBRNA2T00132172001	Gene3D:1.20.120.1750	GO:A0A078CRI3	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:E3_UB_ligase_RBR	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	ProteinID:CDX79440
ProteinID:CDX79440.1	SEG:seg	UniParc:UPI0004EEEC8A	UniPathway:UPA00143	MapMan:19.2.2.1.5.4.1	:

Description

BnaC03g17760D

Coordinates

chrLK031818:+:55346..55980

Molecular Weight (calculated)

20091.0 Da

IEP (calculated)

9.647

GRAVY (calculated)

-0.751

Length

171 amino acids

Sequence
(BLAST)

001: MHYYERWASN QSSRLIAMAD LKKLQSVQLK CLSIRQCTTE SQLQFTVEAW RQIIECRRVL KWTYAYGYYL PEEEQTKKQF FEYLQGEAEA GLERLHHCAE
101: EELKHFVFKT QDSSKNFGDF RRKLTGLTEA TKTYFENLVK ALENGLADVA LSESSKSKTK SKPATKRRKL K

Best Arabidopsis Sequence Match ( AT1G05890.1 )
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN

Arabidopsis Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.