CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47702	Canola	cytosol	92.23	93.47
AT1G05880.2	Thale cress	cytosol	46.21	49.19
CDY68345	Canola	cytosol	32.39	38.95
CDX79440	Canola	cytosol	12.5	38.6
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	36.17	37.3
CDY68344	Canola	nucleus	35.04	37.15
CDY19083	Canola	nucleus	39.02	37.12
CDY15392	Canola	nucleus	39.02	36.98
CDY47704	Canola	nucleus	38.64	36.56
CDX86547	Canola	nucleus	38.26	36.46
CDY10162	Canola	nucleus	38.26	36.4
CDY63791	Canola	nucleus	37.88	36.17
CDX84781	Canola	nucleus	37.88	36.1
CDY23938	Canola	nucleus	37.88	35.91
CDX84759	Canola	nucleus	35.04	35.51
CDX70415	Canola	nucleus	35.04	35.24
CDY42068	Canola	nucleus	30.3	35.01
CDY57807	Canola	nucleus	37.12	34.75
CDX78438	Canola	nucleus	32.58	34.75
CDY16406	Canola	nucleus	35.8	34.55
CDY15374	Canola	nucleus	36.36	33.51
CDX91196	Canola	nucleus	32.2	33.4
CDX79439	Canola	nucleus	20.64	33.33
CDY15373	Canola	nucleus	34.47	33.27
CDY61443	Canola	nucleus	33.9	33.15
KRH24184	Soybean	nucleus	30.11	30.46
CDY34512	Canola	cytosol, nucleus, plastid	16.86	30.27
CDY34490	Canola	cytosol	6.63	28.46
CDX99146	Canola	nucleus	22.16	26.23
CDX99147	Canola	nucleus	16.86	25.14
CDX84438	Canola	cytosol	16.29	23.37
CDY41533	Canola	nucleus	22.16	22.03
CDY40734	Canola	nucleus	19.32	21.38
CDY44786	Canola	nucleus	18.94	20.75
CDY41534	Canola	nucleus	7.01	20.0
CDY31353	Canola	nucleus	16.29	19.33
CDY49768	Canola	nucleus	17.23	18.96
CDY49559	Canola	nucleus	20.83	18.9
CDY39850	Canola	nucleus	15.91	18.83
CDY03991	Canola	nucleus	17.23	18.8
CDY00148	Canola	nucleus	17.23	18.8
CDY20037	Canola	nucleus	18.37	18.51
CDX75425	Canola	nucleus	20.45	18.27
CDX71262	Canola	nucleus	20.08	18.24
CDX69049	Canola	nucleus	20.27	17.92
CDX84439	Canola	nucleus	21.4	17.23
CDY21562	Canola	nucleus	21.59	17.17
CDX69926	Canola	cytosol, mitochondrion, nucleus	21.59	16.99

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	GO:A0A078FAV5	UniProt:A0A078FAV5	EnsemblPlants:CDY10159
ProteinID:CDY10159	ProteinID:CDY10159.1	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00031973001	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR013083	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF211	SMART:SM00647
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE82EA	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC05g04020DBnaC05g04020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAV5]

Coordinates

chrLK032001:+:319776..322475

Molecular Weight (calculated)

61611.0 Da

IEP (calculated)

4.996

GRAVY (calculated)

-0.709

Length

528 amino acids

Sequence
(BLAST)

001: MDDSDIKRLG EILITAEEEE EELNTPDEHD HTETSTHQSY VTILKEGDIR SRMKEGDIRS RMKEEIQRVS NTYSISKDDA TLLLAHFRWD DIELHKNWSD
101: NAKTVRESVG IFELERPLDL PSDDKNFYCG ICFKIHSLER SASVSCGHRV CKFCWRSHIN KRINEIADVD WYGTLKCPYC PASFGWDMIE SFACEEEKTK
201: YYRYLFRSYV EGSKVIKCCP AKGRSCDVHL TPGSGNFDVL CLCLLSFCWN CSQDTHSPMD CESAAKWLRM NSSDYQDPNW VRENTVPCPR CKLRIRENQD
301: WSLKMRCFPP CNYDFCWRCR GQWTEHGLDL YTCTHDEYEE TVFGNMAEYA AGRYKDCHEK WMSNESLMQK AKAKLQQLHT DVIPDLSNKQ LATVQQLEFI
401: AEAWSQIMEC RRVLKWTYAY EYYLGEDQVE KQAFLKLKQD NAEIPLEKLN YHAENQLNML LDSDGPSENF NRFRSDLTDS TRITRNHYEL LVRDLEDGLS
501: NVVGASTSQR ARNEDDASGS SSIHDDLF

Best Arabidopsis Sequence Match ( AT1G05880.2 )
(BLAST)

001: MDNNSVIGSE VDAEADESYV NAALEDGQTG KKSVQRNYAT VLTEEDIRAL MEIDVQSVSD FTSLSKAEAT LLLSHLRWNV DCICKQWSAG AQSVRDSVGL
101: LELDPPSDDN EYFCGACGES HPHKNLASVS CGHRICTRCW TSHINKIISE KPAAEWNLWL KCPVRVGLHA SCPASVGLDT IERFASKREK FNYNQYLLRS
201: YVDNRETMKW HPIQGSRCAI DLSPGSGNAS VSCHRLVRFC WNCREDAHSP VDCKTAAKWL LENAVPCPKC KLRIPRNQDN SLKMKCLPCN YVFCWFCHVD
301: WIEDMEGTGG DLHFCTFDAV LSDQRGKMSE SDSNRYEDCY ENWDSNELLM QKEQANLPKL DTIIQELSNT QLENVSQLKF ILEAGLQIIE CRRVLEWTYV
401: YGYYLREDEV GKQNLLKDTQ ERLKKFVENL KHCLETNLQP FRYEEEPSKD FNAFRIKLTE LTSLTRNHYE NVVKDVENGL ASVVSEGEAS GSGRNQ

Arabidopsis Description

ARI12Probable E3 ubiquitin-protein ligase ARI12 [Source:UniProtKB/Swiss-Prot;Acc:Q84RQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.