Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79440 | Canola | cytosol | 40.48 | 69.59 |
| CDY42068 | Canola | nucleus | 82.31 | 52.95 |
| Bra005642.1-P | Field mustard | nucleus | 79.93 | 46.08 |
| CDY34490 | Canola | cytosol | 15.65 | 37.4 |
| CDX84759 | Canola | nucleus | 65.65 | 37.04 |
| CDY68344 | Canola | nucleus | 60.88 | 35.94 |
| CDY15374 | Canola | nucleus | 65.99 | 33.86 |
| CDY68345 | Canola | cytosol | 49.32 | 33.03 |
| CDY15373 | Canola | nucleus | 59.86 | 32.18 |
| CDX78438 | Canola | nucleus | 49.66 | 29.49 |
| AT2G31760.1 | Thale cress | nucleus | 50.68 | 28.99 |
| AT2G31770.1 | Thale cress | nucleus | 53.06 | 28.73 |
| CDX86547 | Canola | nucleus | 53.74 | 28.52 |
| CDY47704 | Canola | nucleus | 54.08 | 28.49 |
| CDX84781 | Canola | nucleus | 53.4 | 28.34 |
| CDY10162 | Canola | nucleus | 53.4 | 28.29 |
| CDY63791 | Canola | nucleus | 53.06 | 28.21 |
| CDX91196 | Canola | nucleus | 48.64 | 28.09 |
| CDY19083 | Canola | nucleus | 52.72 | 27.93 |
| CDY23938 | Canola | nucleus | 52.72 | 27.83 |
| CDX70415 | Canola | nucleus | 49.66 | 27.81 |
| CDY15392 | Canola | nucleus | 52.38 | 27.65 |
| CDY61443 | Canola | nucleus | 47.96 | 26.11 |
| AT2G31780.1 | Thale cress | nucleus | 38.44 | 25.51 |
| PGSC0003DMT400069483 | Potato | nucleus | 47.96 | 25.41 |
| Solyc06g073340.2.1 | Tomato | nucleus | 47.28 | 25.27 |
| VIT_05s0102g00160.t01 | Wine grape | nucleus | 48.98 | 24.53 |
| GSMUA_Achr6P28580_001 | Banana | nucleus | 46.26 | 24.29 |
| KRH10154 | Soybean | nucleus | 47.96 | 23.94 |
| TraesCS6D01G198600.5 | Wheat | nucleus | 47.96 | 23.94 |
| KRH23186 | Soybean | nucleus | 47.96 | 23.94 |
| CDY57807 | Canola | nucleus | 45.92 | 23.94 |
| GSMUA_Achr9P07970_001 | Banana | nucleus | 44.9 | 23.91 |
| TraesCS6B01G245900.2 | Wheat | nucleus | 47.62 | 23.85 |
| TraesCS6A01G216900.1 | Wheat | nucleus | 47.62 | 23.77 |
| HORVU6Hr1G055260.4 | Barley | nucleus | 47.62 | 23.77 |
| KRH24651 | Soybean | nucleus | 46.94 | 23.55 |
| GSMUA_Achr8P28870_001 | Banana | nucleus | 46.94 | 23.51 |
| CDY16406 | Canola | nucleus | 43.54 | 23.4 |
| KRH29654 | Soybean | nucleus | 46.6 | 23.38 |
| EES11042 | Sorghum | nucleus | 46.6 | 23.26 |
| Zm00001d003207_P001 | Maize | nucleus | 46.6 | 23.26 |
| TraesCS2D01G348000.2 | Wheat | nucleus | 46.26 | 23.09 |
| TraesCS2B01G368000.2 | Wheat | nucleus | 46.26 | 23.09 |
| TraesCS2A01G349600.1 | Wheat | nucleus | 46.26 | 23.09 |
| Zm00001d025750_P011 | Maize | extracellular | 46.26 | 23.09 |
| GSMUA_Achr3P16920_001 | Banana | nucleus | 45.24 | 22.66 |
| Os04t0492100-01 | Rice | nucleus | 35.37 | 22.03 |
| CDX79439 | Canola | nucleus | 22.79 | 20.49 |
| HORVU2Hr1G085060.3 | Barley | cytosol | 41.84 | 18.39 |
| CDY41534 | Canola | nucleus | 11.22 | 17.84 |
| CDY47702 | Canola | cytosol | 29.93 | 16.89 |
| CDY10159 | Canola | cytosol | 30.27 | 16.86 |
| CDY44786 | Canola | nucleus | 19.05 | 11.62 |
| CDY40734 | Canola | nucleus | 18.71 | 11.53 |
| CDX99146 | Canola | nucleus | 17.01 | 11.21 |
| CDY00148 | Canola | nucleus | 17.01 | 10.33 |
| CDX84438 | Canola | cytosol | 12.93 | 10.33 |
| CDX75425 | Canola | nucleus | 20.75 | 10.32 |
| CDX69049 | Canola | nucleus | 20.75 | 10.22 |
| CDY49768 | Canola | nucleus | 15.99 | 9.79 |
| CDY20037 | Canola | nucleus | 17.35 | 9.73 |
| CDY39850 | Canola | nucleus | 14.63 | 9.64 |
| CDY03991 | Canola | nucleus | 15.65 | 9.5 |
| CDX71262 | Canola | nucleus | 18.71 | 9.47 |
| CDY49559 | Canola | nucleus | 18.71 | 9.45 |
| CDY41533 | Canola | nucleus | 17.01 | 9.42 |
| CDY31353 | Canola | nucleus | 13.95 | 9.21 |
| Zm00001d046141_P001 | Maize | cytosol | 7.82 | 8.1 |
| CDX69926 | Canola | cytosol, mitochondrion, nucleus | 18.37 | 8.05 |
| CDY21562 | Canola | nucleus | 17.69 | 7.83 |
| CDX84439 | Canola | nucleus | 17.01 | 7.62 |
| CDX99147 | Canola | nucleus | 7.14 | 5.93 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | GO:A0A078HA38 | UniProt:A0A078HA38 | EnsemblPlants:CDY34512 | ProteinID:CDY34512 |
| ProteinID:CDY34512.1 | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00056894001 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF177 | UniPathway:UPA00143 | UniParc:UPI0004EED659 | SEG:seg |
Description
BnaC04g12870DBnaC04g12870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HA38]
Coordinates
chrLK032335:+:360971..362953
Molecular Weight (calculated)
34541.7 Da
IEP (calculated)
5.486
GRAVY (calculated)
-0.750
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSDDDGTL YTGSGEENLY SDHTAESDYG TEEDMHNDST SKRAQLSYVV LKEEDIREHQ KAGVEQVSMV LSINQVEAII LLLHYQIMNP KTRFGYLRIQ
101: SLVQTATVIS RRTKDFEGDD ETKFKRKRAK RAKKTIDRYM HYYERWGNNQ SSRLKAMEDL KKLQVVQLKK LSVKQCISQT QLQFTVDAWL QIIECRRVLK
201: WSYSYGYYLP QEERTKKQFF EYLQGEAEVG LERLHHCAEE ELQHFVDETD DLSTDFDDFR KKLIGLTKVT KTYFENLVKA LENDLADVAV DDCK
101: SLVQTATVIS RRTKDFEGDD ETKFKRKRAK RAKKTIDRYM HYYERWGNNQ SSRLKAMEDL KKLQVVQLKK LSVKQCISQT QLQFTVDAWL QIIECRRVLK
201: WSYSYGYYLP QEERTKKQFF EYLQGEAEVG LERLHHCAEE ELQHFVDETD DLSTDFDDFR KKLIGLTKVT KTYFENLVKA LENDLADVAV DDCK
001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
Arabidopsis Description
ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.