CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99146	Canola	nucleus	92.94	73.77
AT5G08730.1	Thale cress	cytosol	55.65	39.4
CDX84438	Canola	cytosol	35.03	33.7
CDY40734	Canola	nucleus	44.63	33.12
CDY44786	Canola	nucleus	44.07	32.37
CDY21562	Canola	nucleus	54.24	28.92
CDY41533	Canola	nucleus	41.81	27.87
CDX69926	Canola	cytosol, mitochondrion, nucleus	49.15	25.93
CDX79439	Canola	nucleus	23.45	25.38
CDY39850	Canola	nucleus	31.92	25.34
CDY31353	Canola	nucleus	31.36	24.94
CDX84439	Canola	nucleus	40.96	22.1
CDX70415	Canola	nucleus	30.51	20.57
CDY68344	Canola	nucleus	28.25	20.08
CDY68345	Canola	cytosol	24.58	19.82
CDX78438	Canola	nucleus	27.12	19.39
KRH24184	Soybean	nucleus	28.53	19.35
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.12	18.75
CDY23938	Canola	nucleus	29.1	18.49
CDY63791	Canola	nucleus	28.81	18.44
CDX86547	Canola	nucleus	28.81	18.41
CDX84759	Canola	nucleus	26.84	18.23
CDX84781	Canola	nucleus	28.53	18.23
CDY15392	Canola	nucleus	28.53	18.13
CDY47704	Canola	nucleus	28.53	18.1
CDY16406	Canola	nucleus	27.97	18.1
CDY19083	Canola	nucleus	28.25	18.02
CDY10162	Canola	nucleus	28.25	18.02
CDY15373	Canola	nucleus	27.4	17.73
CDY61443	Canola	nucleus	26.84	17.59
CDY57807	Canola	nucleus	27.97	17.55
CDX91196	Canola	nucleus	25.14	17.49
CDY47702	Canola	cytosol	25.14	17.08
CDY42068	Canola	nucleus	22.03	17.07
CDY00148	Canola	nucleus	23.16	16.94
CDY10159	Canola	cytosol	25.14	16.86
CDY20037	Canola	nucleus	24.58	16.6
CDY15374	Canola	nucleus	26.84	16.58
CDY49768	Canola	nucleus	21.75	16.04
CDY03991	Canola	nucleus	21.47	15.7
CDX71262	Canola	nucleus	24.01	14.63
CDY49559	Canola	nucleus	23.73	14.43
CDX75425	Canola	nucleus	22.03	13.2
CDX69049	Canola	nucleus	22.03	13.07
CDY34490	Canola	cytosol	3.67	10.57
CDY41534	Canola	nucleus	3.95	7.57
CDY34512	Canola	cytosol, nucleus, plastid	5.93	7.14
CDX79440	Canola	cytosol	2.54	5.26

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	GO:A0A078EDP0	EnsemblPlants:CDX99147	ProteinID:CDX99147
ProteinID:CDX99147.1	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00107307001	InterPro:IBR_dom	InterPro:IPR013083	PFAM:PF01485	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213
SMART:SM00647	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE5CD3	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaA06g18380D

Coordinates

chrLK031908:-:684645..685967

Molecular Weight (calculated)

40518.7 Da

IEP (calculated)

4.443

GRAVY (calculated)

-0.315

Length

354 amino acids

Sequence
(BLAST)

001: MESDGQRVYA VLTTNEVSEK MTSEINLISE VFLLSKSDAT LILISLRWNS FKASDRLGDD KEKLLSDLGL VKVFSSCQEN DYVSSFAGQE NLVSTPFCSH
101: KFSETCWKSH LNNLLTEEEE RVVLCPNPDC VAPVGPDTIE KLTEPAVKMM YDRYVLGSFV EANKESIKWC PAPGCEYAIE LHEDLLEDDD LDFGVVCLCG
201: HTFCWSCTLE SHRPVTCKDA SVWFSSTLDT LKSNAWLLEN TKRCPNCNCH VQRTDDPVLR MITCICSCSF CWRCFRSEEE HNGKWNCVEF SFQLSMRQVD
301: DSRYLRLWET CLEEYENSKS DLKAIEENGV PRLTDNCSFN ERDHLCLWSS VGLY

Best Arabidopsis Sequence Match ( AT5G08730.1 )
(BLAST)

001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE

Arabidopsis Description

ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.