CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65430.1	CDX74635	AT5G35750.1	18642946
AT1G65430.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022479.1-P	Field mustard	nucleus	99.29	99.29
CDY16406	Canola	nucleus	96.1	99.09
AT1G65430.1	Thale cress	nucleus	88.12	87.65
VIT_00s0207g00090.t01	Wine grape	nucleus	75.18	72.23
Solyc11g008580.1.1	Tomato	nucleus	73.05	69.71
CDX84781	Canola	nucleus	66.31	67.51
CDY15392	Canola	nucleus	66.31	67.15
CDY19083	Canola	nucleus	65.78	66.85
CDY47704	Canola	nucleus	65.78	66.49
CDY23938	Canola	nucleus	65.6	66.43
CDY10162	Canola	nucleus	64.89	65.95
CDX86547	Canola	nucleus	64.36	65.52
CDY63791	Canola	nucleus	64.01	65.28
CDX79440	Canola	cytosol	17.91	59.06
CDY34490	Canola	cytosol	12.77	58.54
CDX70415	Canola	nucleus	52.66	56.57
CDY68345	Canola	cytosol	43.97	56.49
CDY68344	Canola	nucleus	49.47	56.02
CDX78438	Canola	nucleus	48.23	54.95
CDX91196	Canola	nucleus	49.47	54.81
CDY61443	Canola	nucleus	51.77	54.07
CDX84759	Canola	nucleus	49.29	53.36
CDY15373	Canola	nucleus	50.18	51.74
CDY42068	Canola	nucleus	41.49	51.2
CDX79439	Canola	nucleus	29.26	50.46
CDY15374	Canola	nucleus	50.89	50.09
CDY34512	Canola	cytosol, nucleus, plastid	23.94	45.92
CDY10159	Canola	cytosol	34.75	37.12
CDY47702	Canola	cytosol	34.04	36.85
CDX99146	Canola	nucleus	23.94	30.27
CDY41534	Canola	nucleus	9.4	28.65
CDX99147	Canola	nucleus	17.55	27.97
CDX84438	Canola	cytosol	17.91	27.45
CDY40734	Canola	nucleus	23.05	27.25
CDY44786	Canola	nucleus	22.87	26.76
CDY49559	Canola	nucleus	27.48	26.63
CDX71262	Canola	nucleus	26.77	25.99
CDX75425	Canola	nucleus	26.6	25.38
CDX69049	Canola	nucleus	26.77	25.29
CDY00148	Canola	nucleus	21.63	25.21
CDY39850	Canola	nucleus	19.68	24.89
CDY31353	Canola	nucleus	19.33	24.49
CDY20037	Canola	nucleus	22.7	24.43
CDY03991	Canola	nucleus	20.74	24.17
CDY49768	Canola	nucleus	20.39	23.96
CDY41533	Canola	nucleus	22.16	23.54
CDX84439	Canola	nucleus	23.76	20.43
CDX69926	Canola	cytosol, mitochondrion, nucleus	23.76	19.97
CDY21562	Canola	nucleus	22.52	19.13

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	Gene3D:4.10.1060.10	GO:A0A078J540	UniProt:A0A078J540
EnsemblPlants:CDY57807	ProteinID:CDY57807	ProteinID:CDY57807.1	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00022720001	InterPro:IBR_dom
InterPro:IPR001841	InterPro:IPR001876	InterPro:IPR013083	PFAM:PF01485	ScanProsite:PS01358	PFscan:PS50089
PFscan:PS50199	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	SMART:SM00547	SMART:SM00647	SUPFAM:SSF57850
SUPFAM:SSF90209	UniPathway:UPA00143	UniParc:UPI0004EE6D13	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2
InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:	:

Description

BnaC02g45230DBnaC02g45230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J540]

Coordinates

chrLK033607:-:30545..35409

Molecular Weight (calculated)

64286.8 Da

IEP (calculated)

4.824

GRAVY (calculated)

-0.611

Length

564 amino acids

Sequence
(BLAST)

001: MDGDEDFYSG NECADNDSDY ADSVDADYEF VEDDVDDSDD LVFRRRQQNY SVLSEEDICK LQEEDISRVS SVLSISTISS AILLRHYNWC VSRVHDEWFA
101: DEEKVRHAVG LLDKPLVHFP SDAEAELTCG ICFETYLSDK LHAAACGHPF CDSCWEGYIS TAINDGPGCL MLRCPDPSCN AAIGQDMINA LAPEKDRQKY
201: TSYFVRSYVE DNRKTKWCPA PGCDYAVNFV VGSGNYDVNC RCCYSFCWNC AEEAHRPVVC DTVSKWIMKN SAESENMNWI LANSKPCPKC KRPIEKNQGC
301: MHITCTPPCK YEFCWLCLGA WTEHGEKTGG FYACNRYDAA KQDGIYDETE KRREMAKNSL ERYTHYYERW ATNQSSRQKA LADLKKMQTD DIEKLSDIQC
401: QPESQLKFII EAWLQIVECR RVLKWTYAYG FYIPDHEHGK REFFEYLQGE AESGLERLHQ CAEKELKLYF EAKGPSEDFN EFRTKLAGLT SVTKNYFENL
501: VRALENGLPD VNSHGAYGRA ASSKNKGSTS RASSSDSGGQ WACERCTLVN PKSVTICQIC EHGR

Best Arabidopsis Sequence Match ( AT1G65430.1 )
(BLAST)

001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR

Arabidopsis Description

ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.