Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G65430.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0102g00160.t01 | Wine grape | nucleus | 84.5 | 84.5 |
| Solyc11g008580.1.1 | Tomato | nucleus | 83.3 | 82.74 |
| AT1G65430.1 | Thale cress | nucleus | 74.62 | 77.25 |
| CDY16406 | Canola | nucleus | 70.19 | 75.32 |
| Bra022479.1-P | Field mustard | nucleus | 72.23 | 75.18 |
| CDY57807 | Canola | nucleus | 72.23 | 75.18 |
| VIT_18s0001g11740.t01 | Wine grape | cytosol | 25.21 | 26.67 |
| VIT_03s0063g02000.t01 | Wine grape | nucleus | 26.58 | 26.49 |
Protein Annotations
| Gene3D:1.20.120.1750 | EntrezGene:100257000 | wikigene:100257000 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | EMBL:AM461336 |
| ProteinID:CAN83309 | ProteinID:CAN83309.1 | ProteinID:CCB60989 | ProteinID:CCB60989.1 | InterPro:E3_UB_ligase_RBR | UniProt:F6I222 |
| EMBL:FN596526 | GO:GO:0000151 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031624 | GO:GO:0032436 | GO:GO:0042787 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR001876 | InterPro:IPR013083 | EntrezGene:LOC100257000 |
| wikigene:LOC100257000 | PFAM:PF01485 | ScanProsite:PS01358 | PFscan:PS50089 | PFscan:PS50199 | PANTHER:PTHR11685 |
| PANTHER:PTHR11685:SF177 | SMART:SM00547 | SMART:SM00647 | SUPFAM:SSF57850 | SUPFAM:SSF90209 | TIGR:TC61242 |
| UniParc:UPI000210999D | ArrayExpress:VIT_00s0207g00090 | EnsemblPlantsGene:VIT_00s0207g00090 | EnsemblPlants:VIT_00s0207g00090.t01 | unigene:Vvi.3719 | RefSeq:XP_002268068 |
| RefSeq:XP_002268068.2 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | SEG:seg |
Description
RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6I222]
Coordinates
chrUn:+:12418523..12436018
Molecular Weight (calculated)
66654.2 Da
IEP (calculated)
5.116
GRAVY (calculated)
-0.701
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEDDMHDA NDAESLDDFY SGETAADSDD LDAADYEFID NDSDDSDDLT SHRYQQNYTI LTEADIRQRQ EDDITRISTV LSIPRVSASI LLRHYYWSVS
101: KVHDEWFADE EKVRKAVGLL EKPVVQFPNA RELTCGICFE NYPRDRISSA ACGHPFCGTC WAGYTSTAIT DGPGCLMLRC PDPTCGAAVG QDMINLLASD
201: EDKEKYSRYF LRSYIEDNRK TKWCPAPGCD YAVDFIVGSG SYDVSCRCSY SFCWNCTEEA HRPVDCGTVA KWILKNSAES ENMNWILANS KPCPKCKRPI
301: EKNQGCMHIT CTPPCKFEFC WLCLGAWSDH GERTGGFYAC NRYETAKQEG VYDEAEKRRD MAKNSLERYT HYYERWATNQ SSRQKALADL QQMQTVNIEK
401: LSDKQCQPES QLKFITEAWL QIVECRRVLK WTYAYGYYLP EHEHAKRQFF EYLQGEAESG LERLHQCAEK ELQTYLDADG PSKDFNEFRT KLAGLTSVTR
501: NYFENLVRAL ENGLSDVDSR GACSRTASSK SLGGGSSKAR GGRGKGTSSR SSSSSRNLDD SGHWSCEHCT FANVRSATIC QICQQRR
101: KVHDEWFADE EKVRKAVGLL EKPVVQFPNA RELTCGICFE NYPRDRISSA ACGHPFCGTC WAGYTSTAIT DGPGCLMLRC PDPTCGAAVG QDMINLLASD
201: EDKEKYSRYF LRSYIEDNRK TKWCPAPGCD YAVDFIVGSG SYDVSCRCSY SFCWNCTEEA HRPVDCGTVA KWILKNSAES ENMNWILANS KPCPKCKRPI
301: EKNQGCMHIT CTPPCKFEFC WLCLGAWSDH GERTGGFYAC NRYETAKQEG VYDEAEKRRD MAKNSLERYT HYYERWATNQ SSRQKALADL QQMQTVNIEK
401: LSDKQCQPES QLKFITEAWL QIVECRRVLK WTYAYGYYLP EHEHAKRQFF EYLQGEAESG LERLHQCAEK ELQTYLDADG PSKDFNEFRT KLAGLTSVTR
501: NYFENLVRAL ENGLSDVDSR GACSRTASSK SLGGGSSKAR GGRGKGTSSR SSSSSRNLDD SGHWSCEHCT FANVRSATIC QICQQRR
001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
Arabidopsis Description
ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.