Factsheet for Bra022479.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65430.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16406	Canola	nucleus	96.63	99.63
CDY57807	Canola	nucleus	99.29	99.29
AT1G65430.1	Thale cress	nucleus	88.12	87.65
VIT_00s0207g00090.t01	Wine grape	nucleus	75.18	72.23
Bra021726.1-P	Field mustard	nucleus	63.3	71.12
Solyc11g008580.1.1	Tomato	nucleus	73.05	69.71
Bra022845.1-P	Field mustard	nucleus	66.67	67.99
Bra015463.1-P	Field mustard	nucleus	65.78	66.49
Bra006112.1-P	Field mustard	nucleus	53.01	55.99
Bra021742.1-P	Field mustard	nucleus	49.29	55.82
Bra023338.1-P	Field mustard	nucleus	53.72	54.89
Bra022865.1-P	Field mustard	nucleus	49.47	53.55
Bra005642.1-P	Field mustard	nucleus	47.87	52.94
Bra015460.1-P	Field mustard	nucleus	34.57	37.5
Bra018221.1-P	Field mustard	cytosol	23.58	29.62
Bra038660.1-P	Field mustard	cytosol	9.22	28.11
Bra028646.1-P	Field mustard	nucleus	23.23	27.58
Bra038658.1-P	Field mustard	nucleus	20.74	27.08
Bra001960.1-P	Field mustard	nucleus	27.3	26.46
Bra038659.1-P	Field mustard	nucleus	22.7	25.55
Bra011524.1-P	Field mustard	nucleus	26.42	25.21
Bra039068.1-P	Field mustard	nucleus	23.05	24.81
Bra029204.1-P	Field mustard	nucleus	19.33	24.49
Bra033024.1-P	Field mustard	nucleus	22.34	23.95
Bra038276.1-P	Field mustard	cytosol	24.11	22.55
Bra009365.1-P	Field mustard	cytosol	23.58	19.88

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	Gene3D:4.10.1060.10	EnsemblPlantsGene:Bra022479	EnsemblPlants:Bra022479.1
EnsemblPlants:Bra022479.1-P	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR001876	InterPro:IPR013083
UniProt:M4E131	PFAM:PF01485	ScanProsite:PS01358	PFscan:PS50089	PFscan:PS50199	PANTHER:PTHR11685
PANTHER:PTHR11685:SF177	SMART:SM00547	SMART:SM00647	SUPFAM:SSF57850	SUPFAM:SSF90209	UniParc:UPI0002545931
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:

Description

AT1G65430 (E=1e-282) | zinc finger protein-related

Coordinates

chrA02:-:9511755..9516229

Molecular Weight (calculated)

64350.7 Da

IEP (calculated)

4.789

GRAVY (calculated)

-0.623

Length

564 amino acids

Sequence
(BLAST)

001: MDGDEDFYSG NEFADNDSDY ADSVDADYEF VEDDVDDSDD LLFRRRQQNY SVLSEEDICK LQEEDISRVS SVLSISTISS AILLRHYNWC VSRVHDEWFA
101: DEEKVRHAVG LLDKPLVHFS SDAEAELTCG ICFETYLSDK LHAAACGHPF CDSCWEGYIS TAINDGPGCL MLRCPDPSCN AAIGQDMINA LAPEKDRQKY
201: TSYFVRSYVE DNRKTKWCPA PGCDYAVNFV VGSGNYDVNC RCCYSFCWNC AEEAHRPVDC DTVSKWIMKN SAESENMNWI LANSKPCPKC KRPIEKNQGC
301: MHITCTPPCK YEFCWLCLGA WTEHGEKTGG FYACNRYDAA KQDGIYDETE KRREMAKNSL ERYTHYYERW ATNQSSRQKA LADLKKMQTD DIEKLSDIQC
401: QPESQLKFII EAWLQIVECR RVLKWTYAYG FYIPDHEHGK REFFEYLQGE AESGLERLHQ CAEKELKLYF EAKGPSEDFN EFRTKLAGLT SVTKNYFENL
501: VRALENGLPD VNSHGAYGRA ASSKNKGSTS RASSSDSGGQ WACERCTLVN PKSVTICQIC EHGR

Best Arabidopsis Sequence Match ( AT1G65430.1 )
(BLAST)

001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR

Arabidopsis Description

ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.