Factsheet for Bra038658.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84438	Canola	cytosol	79.4	93.21
Bra038660.1-P	Field mustard	cytosol	21.53	50.27
AT5G63730.1	Thale cress	cytosol	58.8	50.2
Bra029204.1-P	Field mustard	nucleus	49.54	48.09
AT5G63750.1	Thale cress	nucleus	57.18	46.08
Bra038659.1-P	Field mustard	nucleus	52.78	45.51
AT5G63760.2	Thale cress	nucleus	46.53	44.47
Bra028646.1-P	Field mustard	nucleus	40.51	36.84
Bra018221.1-P	Field mustard	cytosol	37.27	35.86
Bra038276.1-P	Field mustard	cytosol	37.27	26.7
Bra009365.1-P	Field mustard	cytosol	40.51	26.16
Bra021726.1-P	Field mustard	nucleus	26.39	22.71
Bra021742.1-P	Field mustard	nucleus	24.77	21.49
Bra005642.1-P	Field mustard	nucleus	25.23	21.37
Bra022865.1-P	Field mustard	nucleus	25.23	20.92
Bra022845.1-P	Field mustard	nucleus	26.62	20.8
Bra006112.1-P	Field mustard	nucleus	25.69	20.79
Bra022479.1-P	Field mustard	nucleus	27.08	20.74
Bra015463.1-P	Field mustard	nucleus	26.62	20.61
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	23.84	20.12
Bra023338.1-P	Field mustard	nucleus	25.0	19.57
KRH24184	Soybean	nucleus	23.61	19.54
Bra015460.1-P	Field mustard	nucleus	22.69	18.85
Bra039068.1-P	Field mustard	nucleus	18.06	14.89
Bra001960.1-P	Field mustard	nucleus	18.98	14.09
Bra033024.1-P	Field mustard	nucleus	16.67	13.69
Bra011524.1-P	Field mustard	nucleus	18.06	13.2

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra038658	EnsemblPlants:Bra038658.1	EnsemblPlants:Bra038658.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001876	InterPro:IPR013083	UniProt:M4FC42	PFAM:PF01485
ScanProsite:PS01358	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000253F2C6
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	SEG:seg	:	:	:

Description

AT5G63730 (E=4e-075) | IBR domain-containing protein

Coordinates

chrA06:-:14435947..14437245

Molecular Weight (calculated)

49897.8 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.453

Length

432 amino acids

Sequence
(BLAST)

001: MEGDQQRPYS VLTRNEVKEK MNKQIDDISG VFYVSKNDAT VLFMYLRWDT LRVSERLGED KDKLFSESGL SSVVSDLSDS SWVICNNKTS DGHVNDDGLI
101: STPCCSHKFC TTCWREYLDS LEKNQTVISC PDQNCRASVG PDTIKKLTGK DKDFYESYIL RSYIEENKGL MIKQCPAPDC NYVIEFHQAN DVEEYGLNVV
201: CLCGHTFCWR CSFESHRPVT CNNVSDWLST EVEVSVVDRW EERKAAMEGA QDDLQDFEDY IIKNPDSLKE QDVRIVREGL MLLIQCRQVL KWSCVYEYFH
301: TEHETSKKEY LQFLQDIATT TLQSYLKTLL EETETAFYAA DALVLCKFRH SLTTATSNVG NFFYHFIKTL QDGIVDVKVK SYDNVAGPYW LCDRCTYGNS
401: WLDMKCKMCC EATTSKLSDL SLKWVSKRSY QH

Best Arabidopsis Sequence Match ( AT5G63760.4 )
(BLAST)

001: MYELYILKSY REKYLGWKLK LCPARGCNYV IEFHLASEDE EHSLNIVCLC GHIFCWRCML ESHRPVTCNN ASDWLSRDLE KLIEEVDKPS TVSWIDANTK
101: PCPHCFIPVE IDGERPWAQF LTCVCSGRFC WKCFRSPETH GTSGSCLAPA RSSNVGFNHW NRAKPGISCL DLWNASQVNL VNAKYELEAF EESIIKKPSD
201: LKEQDVKVLR EGLMLIVQCR QFLKWSCAYD YIHTEYDMAK REYLRFLQQN ASGIVHSFSQ SIKEETEAKE LTCGKLLSET TNIGNFFYHF IKTLREGLPE
301: VQAESYDNYG GPYWLCDRCT YGNSWFQRAC KMCCDPTASK MDELSD

Arabidopsis Description

ARI15Probable E3 ubiquitin-protein ligase ARI15 [Source:UniProtKB/Swiss-Prot;Acc:Q84RQ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.