Factsheet for Bra028646.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40734	Canola	nucleus	98.53	98.11
Bra018221.1-P	Field mustard	cytosol	42.32	44.77
Bra009365.1-P	Field mustard	cytosol	57.68	40.96
Bra038658.1-P	Field mustard	nucleus	36.84	40.51
Bra038276.1-P	Field mustard	cytosol	43.16	34.0
Bra038659.1-P	Field mustard	nucleus	35.58	33.73
Bra029204.1-P	Field mustard	nucleus	31.16	33.26
Bra038660.1-P	Field mustard	cytosol	11.79	30.27
Bra021726.1-P	Field mustard	nucleus	26.32	24.9
Bra022479.1-P	Field mustard	nucleus	27.58	23.23
Bra021742.1-P	Field mustard	nucleus	24.21	23.09
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	24.84	23.05
Bra022845.1-P	Field mustard	nucleus	26.74	22.97
Bra006112.1-P	Field mustard	nucleus	25.47	22.66
Bra005642.1-P	Field mustard	nucleus	24.21	22.55
Bra022865.1-P	Field mustard	nucleus	24.63	22.46
Bra015463.1-P	Field mustard	nucleus	25.89	22.04
Bra023338.1-P	Field mustard	nucleus	24.0	20.65
KRH24184	Soybean	nucleus	22.53	20.5
Bra015460.1-P	Field mustard	nucleus	21.05	19.23
Bra039068.1-P	Field mustard	nucleus	17.68	16.03
Bra001960.1-P	Field mustard	nucleus	18.95	15.46
Bra033024.1-P	Field mustard	nucleus	17.05	15.4
Bra011524.1-P	Field mustard	nucleus	18.53	14.89

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra028646	EnsemblPlants:Bra028646.1	EnsemblPlants:Bra028646.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001876	InterPro:IPR013083	UniProt:M4EIN1	PFAM:PF01485
ScanProsite:PS01358	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI00025432D1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	SEG:seg	:	:	:

Description

AT5G08730 (E=1e-065) | IBR domain-containing protein

Coordinates

chrA02:-:2716589..2718016

Molecular Weight (calculated)

54608.4 Da

IEP (calculated)

5.304

GRAVY (calculated)

-0.480

Length

475 amino acids

Sequence
(BLAST)

001: MNYNGRRLYS VHTREEIREK MMKEVVQISE VFSLSLSDAT VILVHLCWNL CKASDRLVDD KEKFLSELGL VGSSDEDLEV DGEGDDNLVS TPFCSHKFSR
101: DCWRDYLSKT LKKKKKKEDE RVLSISCLSQ DCVASVGPGT VEKLGEPVKE MYERYLLASF MESNKETIKR CPDCDDYAIK RHDEVPSEDF DVVCLCGHIF
201: CWSCQLESHR PVTCNNASFW LNELLYKSRN LARTAKRIKH CPECYSLVEN HDGVWKCTDC SVSQPSNDSA LIRHMTLWET SDAALQRSKW DLEAVEEKTM
301: DANCSRELDV KAIREAWMLT VQCRLVLKWS CVFGYFISDY HIAKKEYLDY LREKATANLS KHKETLHEVT DGIISGGGGI IAFREKLGDT TETTGNYFRF
401: FVKTLEDGLC DVKVDAYEDV TTDYWFCDRC TFKNDSFDQE CRMCVFSFES PPHVALCNVN SSASSHQQQQ DKRAQ

Best Arabidopsis Sequence Match ( AT5G08730.1 )
(BLAST)

001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE

Arabidopsis Description

ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.