Factsheet for Bra009365.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69926	Canola	cytosol, mitochondrion, nucleus	98.95	98.66
Bra028646.1-P	Field mustard	nucleus	40.96	57.68
Bra018221.1-P	Field mustard	cytosol	32.88	49.0
Bra038658.1-P	Field mustard	nucleus	26.16	40.51
Bra038276.1-P	Field mustard	cytosol	33.93	37.65
Bra029204.1-P	Field mustard	nucleus	23.62	35.51
Bra038659.1-P	Field mustard	nucleus	25.26	33.73
Bra038660.1-P	Field mustard	cytosol	7.77	28.11
Bra021726.1-P	Field mustard	nucleus	19.73	26.29
Bra005642.1-P	Field mustard	nucleus	19.43	25.49
Bra021742.1-P	Field mustard	nucleus	18.68	25.1
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.68	24.41
Bra022845.1-P	Field mustard	nucleus	19.73	23.87
Bra022865.1-P	Field mustard	nucleus	18.54	23.8
Bra006112.1-P	Field mustard	nucleus	18.98	23.78
Bra015463.1-P	Field mustard	nucleus	19.73	23.66
Bra022479.1-P	Field mustard	nucleus	19.88	23.58
Bra023338.1-P	Field mustard	nucleus	18.24	22.1
KRH24184	Soybean	nucleus	17.04	21.84
Bra015460.1-P	Field mustard	nucleus	16.89	21.73
Bra033024.1-P	Field mustard	nucleus	13.6	17.3
Bra001960.1-P	Field mustard	nucleus	14.95	17.18
Bra039068.1-P	Field mustard	nucleus	13.45	17.18
Bra011524.1-P	Field mustard	nucleus	14.5	16.41

Protein Annotations

Gene3D:1.20.120.1750	Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra009365	EnsemblPlants:Bra009365.1	EnsemblPlants:Bra009365.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001876	InterPro:IPR013083	UniProt:M4CYR8	PFAM:PF01485
ScanProsite:PS01358	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI0002543B7A
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	SEG:seg	:	:	:

Description

AT5G08730 (E=3e-124) | IBR domain-containing protein

Coordinates

chrA10:-:16356726..16358808

Molecular Weight (calculated)

74062.7 Da

IEP (calculated)

5.081

GRAVY (calculated)

-0.382

Length

669 amino acids

Sequence
(BLAST)

001: MESAAAAQRL YSVLTRTEVR DKMMKEIVQI SEVFSLSQSD ATVALIHLGW DSFKASDLLG DNKERFLSKL GLVGDGDNDN LVSSTPLCSH KFCSDCWRDH
101: LSEALEEEKE MMISCVVASV GPDTEPVKEM YERYVLGSFM DSNRIKWCPA KGCEYAIQRH DDHDDADEEE EASDFGVVCL CGHTFCWRCK NESHRPVTCN
201: NASLWLNELL DEARTFGLIA TKTKPCPHCQ SRVEKDSDNY LRIVTCVCSY AFCWRCLRPE EDHRGGLDYC FEVFVPPPHE EAALLHHLTL WEESHKAMEA
301: SKTYLKAIES LGELDMGAVR EACALIVQCR LVLKWCGVFG YFITDYHSGK KQYLDHLVEK ATANLLKHKE CMDELVRGAD SGGVVAGFRH KLETSTKATG
401: NYFHVFVKTV EDGLCDVKAG VFENVPMDYW FCDRCTFQND SFEKKCRVCV FPFEGPSPLV ALNNNGAASV HQEQELPNVS SNPFASPQQE APNTVVFGNT
501: NNTASANMFN NPFATSPGGT NLFQSAPLPA MSNNPFALPV AFGNNNSSIG ASVHQQQIPN LANNPFASNP GGGFYNHPVF PFGSNSIGAS AYQPNMANNP
601: FAAYGNNSAP HHQQEQVPTM ANNPFARPGG ANPFQFPSFV GFGNSNNSAH KQEAVVKEEP NLENSMESE

Best Arabidopsis Sequence Match ( AT5G08730.1 )
(BLAST)

001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE

Arabidopsis Description

ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.