Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009365.1-P | Field mustard | cytosol | 98.66 | 98.95 |
| CDY21562 | Canola | nucleus | 75.56 | 76.36 |
| CDY40734 | Canola | nucleus | 41.28 | 58.07 |
| CDY44786 | Canola | nucleus | 41.43 | 57.68 |
| CDX99147 | Canola | nucleus | 25.93 | 49.15 |
| CDX99146 | Canola | nucleus | 32.64 | 49.1 |
| CDX84438 | Canola | cytosol | 21.46 | 39.13 |
| CDY41533 | Canola | nucleus | 28.76 | 36.35 |
| CDY39850 | Canola | nucleus | 23.99 | 36.1 |
| CDY31353 | Canola | nucleus | 23.55 | 35.51 |
| CDY41534 | Canola | nucleus | 7.9 | 28.65 |
| CDX84439 | Canola | nucleus | 25.93 | 26.52 |
| CDY68345 | Canola | cytosol | 17.14 | 26.2 |
| CDY68344 | Canola | nucleus | 18.93 | 25.5 |
| CDY15392 | Canola | nucleus | 20.27 | 24.42 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 18.63 | 24.41 |
| CDY63791 | Canola | nucleus | 20.12 | 24.41 |
| CDX70415 | Canola | nucleus | 19.08 | 24.38 |
| CDX86547 | Canola | nucleus | 20.12 | 24.37 |
| CDY19083 | Canola | nucleus | 20.12 | 24.32 |
| CDY10162 | Canola | nucleus | 20.12 | 24.32 |
| CDY16406 | Canola | nucleus | 19.82 | 24.31 |
| CDX78438 | Canola | nucleus | 17.88 | 24.24 |
| CDY23938 | Canola | nucleus | 19.97 | 24.06 |
| CDX84781 | Canola | nucleus | 19.82 | 24.01 |
| CDX79440 | Canola | cytosol | 6.11 | 23.98 |
| CDY47704 | Canola | nucleus | 19.82 | 23.84 |
| CDX84759 | Canola | nucleus | 18.48 | 23.8 |
| CDY57807 | Canola | nucleus | 19.97 | 23.76 |
| CDX79439 | Canola | nucleus | 11.48 | 23.55 |
| CDY42068 | Canola | nucleus | 15.95 | 23.41 |
| CDY15374 | Canola | nucleus | 19.67 | 23.04 |
| CDX91196 | Canola | nucleus | 17.29 | 22.79 |
| CDY15373 | Canola | nucleus | 18.33 | 22.49 |
| CDY61443 | Canola | nucleus | 17.73 | 22.04 |
| KRH24184 | Soybean | nucleus | 16.99 | 21.84 |
| CDY47702 | Canola | cytosol | 16.84 | 21.69 |
| CDY10159 | Canola | cytosol | 16.99 | 21.59 |
| CDY34490 | Canola | cytosol | 3.43 | 18.7 |
| CDY34512 | Canola | cytosol, nucleus, plastid | 8.05 | 18.37 |
| CDY49768 | Canola | nucleus | 12.97 | 18.12 |
| CDY03991 | Canola | nucleus | 12.97 | 17.98 |
| CDY00148 | Canola | nucleus | 12.97 | 17.98 |
| CDY49559 | Canola | nucleus | 14.9 | 17.18 |
| CDY20037 | Canola | nucleus | 13.41 | 17.18 |
| CDX71262 | Canola | nucleus | 14.31 | 16.52 |
| CDX75425 | Canola | nucleus | 14.46 | 16.41 |
| CDX69049 | Canola | nucleus | 14.46 | 16.25 |
Protein Annotations
| Gene3D:1.20.120.1750 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078BYW3 | EnsemblPlants:CDX69926 | ProteinID:CDX69926 |
| ProteinID:CDX69926.1 | ncoils:Coil | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00136001001 | InterPro:IBR_dom | InterPro:IPR001876 | InterPro:IPR013083 | PFAM:PF01485 |
| ScanProsite:PS01358 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF213 | SMART:SM00647 | SUPFAM:SSF57850 | UniPathway:UPA00143 |
| UniParc:UPI0004EF38DE | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RanBP2 | SEG:seg | : | : |
Description
BnaA10g22750D
Coordinates
chrLK031790:+:2366670..2368995
Molecular Weight (calculated)
74299.9 Da
IEP (calculated)
4.844
GRAVY (calculated)
-0.400
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MESAAAQRLY SVLTRTEVRD KMMKEIVQIS EVFSLSQSDA TVALIHLGWD SFKASDLLGD NKERFLSKLG LVGDGDNDNL VSSTPLCSHK FCSDCWRDHL
101: SEALEEEKEM MISCVVASVG PDTEPVKEMY ERYVLGSFMD SNRIKWCPAK GCEYAIQRHD DQDGDDADEE EEEASDFGVV CLCGHTFCWR CKNESHRPVT
201: CNNASLWLNE LLDEARTFGL IATKTKPCPH CQSRVEKDSD NYLRIVTCVC SYAFCWRCLR PEEDHRGGLD YCFEVFVPPP HEEAALLHHL TLWEESHKAM
301: EASKTYLKAI ESLGELDMGA VREACALIVQ CRLVLKWCGV FGYFITDYNS GKKQYLDHLV EKATANLLKH KECMDELVRG ADSGGVVAGF RHKLETSTKA
401: TGNYFHVFVK TVEDGLCDVK AGVFENVPMD YWFCDRCTFQ NDSFEKKCRV CVFPFEGPSP LVALNNNGAA SVHQEQELPN VSSNPFASPQ QEAPNTVAFG
501: NTNNTATANM FNNPFATSPG GTNLFQSAPL PAMSNNPFAL PVAFGNNNSS IGASVHQQQI PNLANNPFAS NPGGGFYNHP VFPFGNNSIG ASAYQPNMAN
601: NPFAAYGNNS APHYQQEQVP TMANNPFARP GGANPFQFPS FVGFGNSNNS AHKQEAVVKE EPNLENSMES E
101: SEALEEEKEM MISCVVASVG PDTEPVKEMY ERYVLGSFMD SNRIKWCPAK GCEYAIQRHD DQDGDDADEE EEEASDFGVV CLCGHTFCWR CKNESHRPVT
201: CNNASLWLNE LLDEARTFGL IATKTKPCPH CQSRVEKDSD NYLRIVTCVC SYAFCWRCLR PEEDHRGGLD YCFEVFVPPP HEEAALLHHL TLWEESHKAM
301: EASKTYLKAI ESLGELDMGA VREACALIVQ CRLVLKWCGV FGYFITDYNS GKKQYLDHLV EKATANLLKH KECMDELVRG ADSGGVVAGF RHKLETSTKA
401: TGNYFHVFVK TVEDGLCDVK AGVFENVPMD YWFCDRCTFQ NDSFEKKCRV CVFPFEGPSP LVALNNNGAA SVHQEQELPN VSSNPFASPQ QEAPNTVAFG
501: NTNNTATANM FNNPFATSPG GTNLFQSAPL PAMSNNPFAL PVAFGNNNSS IGASVHQQQI PNLANNPFAS NPGGGFYNHP VFPFGNNSIG ASAYQPNMAN
601: NPFAAYGNNS APHYQQEQVP TMANNPFARP GGANPFQFPS FVGFGNSNNS AHKQEAVVKE EPNLENSMES E
001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE
Arabidopsis Description
ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.