CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69926	Canola	cytosol, mitochondrion, nucleus	76.36	75.56
CDY40734	Canola	nucleus	42.92	59.75
CDY44786	Canola	nucleus	43.07	59.34
CDX99147	Canola	nucleus	28.92	54.24
CDX99146	Canola	nucleus	34.94	52.02
CDX84438	Canola	cytosol	23.34	42.12
CDY41533	Canola	nucleus	30.87	38.61
CDY39850	Canola	nucleus	25.45	37.89
CDY31353	Canola	nucleus	24.7	36.85
CDY41534	Canola	nucleus	7.83	28.11
CDX84439	Canola	nucleus	27.56	27.9
CDY68345	Canola	cytosol	17.92	27.11
CDY68344	Canola	nucleus	19.13	25.5
CDX79439	Canola	nucleus	12.5	25.38
CDX84759	Canola	nucleus	19.28	24.57
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.83	24.41
CDX70415	Canola	nucleus	19.13	24.19
CDY15374	Canola	nucleus	20.78	24.08
CDY63791	Canola	nucleus	19.88	23.87
CDX78438	Canola	nucleus	17.77	23.84
CDX86547	Canola	nucleus	19.88	23.83
CDY15392	Canola	nucleus	19.88	23.7
CDY10162	Canola	nucleus	19.73	23.6
CDX84781	Canola	nucleus	19.58	23.47
CDY19083	Canola	nucleus	19.58	23.42
CDY47704	Canola	nucleus	19.58	23.3
CDY16406	Canola	nucleus	19.13	23.22
CDY42068	Canola	nucleus	15.96	23.19
CDY23938	Canola	nucleus	19.43	23.16
CDY15373	Canola	nucleus	18.83	22.85
CDX79440	Canola	cytosol	5.87	22.81
CDY57807	Canola	nucleus	19.13	22.52
CDX91196	Canola	nucleus	17.17	22.4
CDY47702	Canola	cytosol	17.32	22.07
CDY61443	Canola	nucleus	17.77	21.85
CDY10159	Canola	cytosol	17.17	21.59
KRH24184	Soybean	nucleus	16.87	21.46
CDY49768	Canola	nucleus	14.01	19.38
CDY00148	Canola	nucleus	14.01	19.21
CDY03991	Canola	nucleus	13.7	18.8
CDY34490	Canola	cytosol	3.46	18.7
CDY20037	Canola	nucleus	14.61	18.51
CDY49559	Canola	nucleus	16.11	18.38
CDX71262	Canola	nucleus	15.51	17.73
CDY34512	Canola	cytosol, nucleus, plastid	7.83	17.69
CDX75425	Canola	nucleus	15.36	17.26
CDX69049	Canola	nucleus	15.36	17.09

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	GO:A0A078G9A0	UniProt:A0A078G9A0	EnsemblPlants:CDY21562
ProteinID:CDY21562	ProteinID:CDY21562.1	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00016021001	InterPro:IBR_dom	InterPro:IPR001876
InterPro:IPR013083	PFAM:PF01485	ScanProsite:PS01358	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	SMART:SM00647
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE2D0F	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	SEG:seg

Description

BnaC09g47300DBnaC09g47300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9A0]

Coordinates

chrLK032122:-:259989..262370

Molecular Weight (calculated)

73823.7 Da

IEP (calculated)

6.461

GRAVY (calculated)

-0.264

Length

664 amino acids

Sequence
(BLAST)

001: MESSAAQRLY SVLTRTEVRD KMMKEIVQIS EVFSLSQSDA TVALIRLGWD SFKASDLLGD NKEKFLSKLG LVQVSGSKRG DGDNNNLVST PLCSHKFCSD
101: CWRDHLTQSL KKEEMVMSCL SQDCVASVGP DTIEKLEEPV KEMYERYVLG SFMDSNGIKW CPSKGCEYAI ERHEDGDDDD EEASDFGVVC LCGHTFCWRC
201: KLESHRPVTC NNASLWLNEL LDEARTFGLI ATKTKPCPHC QSRVEKDSDN NNLRIVTCVC SYAFCWRCLR PEEDHRGGLD HCSEVFVPPP REETDLVHHL
301: TLWEESHKAM EASKTNLKAI ERKSVPLLTE GCGLGGLDMG AVREACMLIV QCRLVLKWSG VFGYFITDYH SGKKQYLDHL VEKATANLLK HVKSVDELVE
401: GAVSGGVVAG FRHKMETSTK ATGNYFHVFV KTVEDGLCDV KAGVFENVPT DYWFCDRCTF QNDSFEQKCR VCVFPFEGPS PLVALGNNGT AIAHQQQELP
501: NVSSNPFASP QQEAPNTVAF GNTNNTASAN MFNNPFASVG GTNLFGSAPL VAFGNSNSGA HQLPAMSNNP FALPAAFGNN SSIALVQALI NQTWRTIHLL
601: LMVTTVLISN KSQPWRTIHL LVQEEQIRFS LLHLWVSVTA TVLISKKPSS RRNQTSKIRW RASD

Best Arabidopsis Sequence Match ( AT5G08730.1 )
(BLAST)

001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE

Arabidopsis Description

ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.