Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038660.1-P | Field mustard | cytosol | 99.46 | 99.46 |
| CDY31353 | Canola | nucleus | 52.97 | 22.02 |
| CDY39850 | Canola | nucleus | 51.35 | 21.3 |
| CDX79440 | Canola | cytosol | 19.46 | 21.05 |
| AT5G63760.2 | Thale cress | nucleus | 45.95 | 18.81 |
| CDY41533 | Canola | nucleus | 53.51 | 18.64 |
| CDX84439 | Canola | nucleus | 65.95 | 18.6 |
| AT5G63750.1 | Thale cress | nucleus | 51.89 | 17.91 |
| AT5G63730.1 | Thale cress | cytosol | 48.65 | 17.79 |
| CDX84438 | Canola | cytosol | 33.51 | 16.85 |
| CDY34490 | Canola | cytosol | 8.11 | 12.2 |
| CDY40734 | Canola | nucleus | 30.81 | 11.95 |
| CDY44786 | Canola | nucleus | 30.27 | 11.62 |
| CDY34512 | Canola | cytosol, nucleus, plastid | 17.84 | 11.22 |
| CDX99146 | Canola | nucleus | 23.24 | 9.64 |
| CDY57807 | Canola | nucleus | 28.65 | 9.4 |
| CDY16406 | Canola | nucleus | 27.03 | 9.14 |
| CDY68345 | Canola | cytosol | 20.0 | 8.43 |
| CDX69926 | Canola | cytosol, mitochondrion, nucleus | 28.65 | 7.9 |
| CDY21562 | Canola | nucleus | 28.11 | 7.83 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 21.62 | 7.81 |
| CDY68344 | Canola | nucleus | 20.0 | 7.43 |
| CDX84759 | Canola | nucleus | 20.0 | 7.1 |
| CDX91196 | Canola | nucleus | 19.46 | 7.07 |
| CDX84781 | Canola | nucleus | 21.08 | 7.04 |
| CDY61443 | Canola | nucleus | 20.54 | 7.04 |
| CDY10162 | Canola | nucleus | 21.08 | 7.03 |
| CDY19083 | Canola | nucleus | 21.08 | 7.03 |
| CDY10159 | Canola | cytosol | 20.0 | 7.01 |
| CDY15392 | Canola | nucleus | 21.08 | 7.0 |
| CDY23938 | Canola | nucleus | 21.08 | 7.0 |
| CDY47704 | Canola | nucleus | 21.08 | 6.99 |
| CDX86547 | Canola | nucleus | 20.54 | 6.86 |
| CDY42068 | Canola | nucleus | 16.76 | 6.78 |
| CDY47702 | Canola | cytosol | 18.92 | 6.72 |
| CDY63791 | Canola | nucleus | 20.0 | 6.69 |
| CDX78438 | Canola | nucleus | 17.84 | 6.67 |
| CDY15374 | Canola | nucleus | 20.54 | 6.63 |
| CDX70415 | Canola | nucleus | 18.38 | 6.48 |
| CDY15373 | Canola | nucleus | 18.38 | 6.22 |
| KRH24184 | Soybean | nucleus | 17.3 | 6.13 |
| CDX71262 | Canola | nucleus | 12.97 | 4.13 |
| CDY49559 | Canola | nucleus | 12.97 | 4.12 |
| CDX99147 | Canola | nucleus | 7.57 | 3.95 |
| CDX75425 | Canola | nucleus | 11.89 | 3.72 |
| CDY03991 | Canola | nucleus | 9.73 | 3.72 |
| CDY00148 | Canola | nucleus | 9.73 | 3.72 |
| CDX69049 | Canola | nucleus | 11.89 | 3.69 |
| CDY20037 | Canola | nucleus | 10.27 | 3.63 |
| CDY49768 | Canola | nucleus | 9.19 | 3.54 |
| CDX79439 | Canola | nucleus | 1.62 | 0.92 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:35.1 | GO:A0A078HW07 | UniProt:A0A078HW07 | EnsemblPlants:CDY41534 | ProteinID:CDY41534 |
| ProteinID:CDY41534.1 | ncoils:Coil | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00073161001 | InterPro:IPR001876 | ScanProsite:PS01358 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF213 |
| UniPathway:UPA00143 | UniParc:UPI0004EF197B | InterPro:Znf_RanBP2 | : | : | : |
Description
BnaA06g22870DBnaA06g22870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW07]
Coordinates
chrLK032499:-:273067..273624
Molecular Weight (calculated)
21668.4 Da
IEP (calculated)
4.449
GRAVY (calculated)
-0.483
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDTSCLDRW EACEASMEKA RSELQAFEES NNTTLREGLM MIVQCRQFLK WSCVYEYIHL EHEDSKEEFL RFLQDYASTL VQSFSETLKK EREKALSETT
101: LEEVTCSRGN LYDVTINIGN YLYNFGKALQ DGLDVVEVRH YDDFSPCWLC DRCTYANTWL HKVCQMCYEF PVEKPSGSFL NKVSS
101: LEEVTCSRGN LYDVTINIGN YLYNFGKALQ DGLDVVEVRH YDDFSPCWLC DRCTYANTWL HKVCQMCYEF PVEKPSGSFL NKVSS
001: MEYDGRRPYS VLTRNEITVK MKKQINEISD IFFISNSDAT VLLMYLRWDS LRVSERLGEN KEKLLMDSGL KSVMIDPSPD SSSEISLETD VYEFDGDNDL
101: ISMPFCSHKF DSKYWREYLE KNFYYVEKIQ TTISCPDQDC RSAVGPDTIE KLTVRDQEMY ERYIWRSYIE GNKVLMIKQC PARNCDYVIE FHQENDDDDE
201: YSLNVVCICG HIFCWRCRLE SHRPVSCNKA SDWLCSATMK ISDESFSLYP TKTKTVTCPH CLCSLESDTK MPQFLTCVCR LRFCSRCLRS EEAHKIEAVD
301: SGFCIKTEVG ILCEDRWNVC QKLLEQAKSD LEAFEETNIK KPSDLLREQD IMIIREGLML IVQCRRVLKW CCVYDYFHTE YENSKEYLRY LQGNAIATLQ
401: SYSNTLQEQK DIVLAAATYE ECTFFRHTIP TATSNIGNYF YDFMKTLQDG LVDVKVKSYN GGTGPFWYCD RCTYANTWED NECEMCYDDS ASLVGEISDL
501: FLNKVS
101: ISMPFCSHKF DSKYWREYLE KNFYYVEKIQ TTISCPDQDC RSAVGPDTIE KLTVRDQEMY ERYIWRSYIE GNKVLMIKQC PARNCDYVIE FHQENDDDDE
201: YSLNVVCICG HIFCWRCRLE SHRPVSCNKA SDWLCSATMK ISDESFSLYP TKTKTVTCPH CLCSLESDTK MPQFLTCVCR LRFCSRCLRS EEAHKIEAVD
301: SGFCIKTEVG ILCEDRWNVC QKLLEQAKSD LEAFEETNIK KPSDLLREQD IMIIREGLML IVQCRRVLKW CCVYDYFHTE YENSKEYLRY LQGNAIATLQ
401: SYSNTLQEQK DIVLAAATYE ECTFFRHTIP TATSNIGNYF YDFMKTLQDG LVDVKVKSYN GGTGPFWYCD RCTYANTWED NECEMCYDDS ASLVGEISDL
501: FLNKVS
Arabidopsis Description
ARI14Probable E3 ubiquitin-protein ligase ARI14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.