Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68344 | Canola | nucleus | 83.55 | 91.77 |
| CDY68345 | Canola | cytosol | 57.22 | 71.3 |
| CDX79439 | Canola | nucleus | 41.32 | 69.11 |
| CDY42068 | Canola | nucleus | 56.86 | 68.05 |
| CDX84759 | Canola | nucleus | 64.72 | 67.95 |
| CDX79440 | Canola | cytosol | 21.02 | 67.25 |
| AT2G31780.1 | Thale cress | nucleus | 52.83 | 65.24 |
| CDY15374 | Canola | nucleus | 67.82 | 64.75 |
| AT2G31760.1 | Thale cress | nucleus | 60.33 | 64.2 |
| AT2G31770.1 | Thale cress | nucleus | 61.43 | 61.88 |
| CDY34512 | Canola | cytosol, nucleus, plastid | 32.18 | 59.86 |
| CDX84781 | Canola | nucleus | 58.68 | 57.94 |
| CDY63791 | Canola | nucleus | 58.14 | 57.5 |
| CDX86547 | Canola | nucleus | 58.14 | 57.4 |
| CDY15392 | Canola | nucleus | 58.32 | 57.27 |
| CDY23938 | Canola | nucleus | 58.32 | 57.27 |
| CDY19083 | Canola | nucleus | 57.95 | 57.12 |
| CDY47704 | Canola | nucleus | 57.22 | 56.09 |
| CDY10162 | Canola | nucleus | 56.67 | 55.86 |
| CDX70415 | Canola | nucleus | 52.1 | 54.29 |
| CDX78438 | Canola | nucleus | 47.53 | 52.53 |
| PGSC0003DMT400069483 | Potato | nucleus | 53.2 | 52.43 |
| Solyc06g073340.2.1 | Tomato | nucleus | 52.65 | 52.36 |
| CDX91196 | Canola | nucleus | 48.26 | 51.87 |
| CDY61443 | Canola | nucleus | 50.46 | 51.11 |
| GSMUA_Achr6P28580_001 | Banana | nucleus | 52.1 | 50.89 |
| GSMUA_Achr9P07970_001 | Banana | nucleus | 51.19 | 50.72 |
| CDY16406 | Canola | nucleus | 50.46 | 50.46 |
| VIT_05s0102g00160.t01 | Wine grape | nucleus | 54.11 | 50.43 |
| CDY57807 | Canola | nucleus | 51.74 | 50.18 |
| Zm00001d003207_P001 | Maize | nucleus | 53.93 | 50.08 |
| KRH23186 | Soybean | nucleus | 53.93 | 50.08 |
| EES11042 | Sorghum | nucleus | 53.93 | 50.08 |
| TraesCS2A01G349600.1 | Wheat | nucleus | 53.75 | 49.92 |
| TraesCS2D01G348000.2 | Wheat | nucleus | 53.75 | 49.92 |
| Os04t0492100-01 | Rice | nucleus | 42.96 | 49.79 |
| KRH10154 | Soybean | nucleus | 53.56 | 49.75 |
| TraesCS2B01G368000.2 | Wheat | nucleus | 53.56 | 49.75 |
| Zm00001d025750_P011 | Maize | extracellular | 53.56 | 49.75 |
| KRH29654 | Soybean | nucleus | 53.2 | 49.66 |
| KRH24651 | Soybean | nucleus | 53.02 | 49.49 |
| HORVU6Hr1G055260.4 | Barley | nucleus | 53.2 | 49.41 |
| GSMUA_Achr8P28870_001 | Banana | nucleus | 52.83 | 49.23 |
| TraesCS6B01G245900.2 | Wheat | nucleus | 52.83 | 49.23 |
| TraesCS6A01G216900.1 | Wheat | nucleus | 52.83 | 49.07 |
| TraesCS6D01G198600.5 | Wheat | nucleus | 52.65 | 48.9 |
| GSMUA_Achr3P16920_001 | Banana | nucleus | 52.29 | 48.72 |
| CDY34490 | Canola | cytosol | 10.6 | 47.15 |
| Zm00001d046141_P001 | Maize | cytosol | 21.57 | 41.55 |
| HORVU2Hr1G085060.3 | Barley | cytosol | 50.46 | 41.26 |
| CDY47702 | Canola | cytosol | 33.09 | 34.74 |
| CDY10159 | Canola | cytosol | 33.27 | 34.47 |
| CDX99146 | Canola | nucleus | 23.4 | 28.7 |
| CDX99147 | Canola | nucleus | 17.73 | 27.4 |
| CDX84438 | Canola | cytosol | 18.1 | 26.9 |
| CDY00148 | Canola | nucleus | 22.3 | 25.21 |
| CDY20037 | Canola | nucleus | 23.58 | 24.62 |
| CDY49768 | Canola | nucleus | 20.84 | 23.75 |
| CDY40734 | Canola | nucleus | 20.66 | 23.69 |
| CDY03991 | Canola | nucleus | 20.84 | 23.55 |
| CDY44786 | Canola | nucleus | 20.66 | 23.44 |
| CDY41533 | Canola | nucleus | 21.57 | 22.22 |
| CDY49559 | Canola | nucleus | 23.58 | 22.16 |
| CDX71262 | Canola | nucleus | 23.4 | 22.03 |
| CDX75425 | Canola | nucleus | 23.77 | 22.0 |
| CDX69049 | Canola | nucleus | 23.77 | 21.78 |
| CDY39850 | Canola | nucleus | 17.73 | 21.75 |
| CDY31353 | Canola | nucleus | 17.0 | 20.9 |
| CDX84439 | Canola | nucleus | 23.03 | 19.21 |
| CDY21562 | Canola | nucleus | 22.85 | 18.83 |
| CDY41534 | Canola | nucleus | 6.22 | 18.38 |
| CDX69926 | Canola | cytosol, mitochondrion, nucleus | 22.49 | 18.33 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | GO:A0A078FSU3 | UniProt:A0A078FSU3 | EnsemblPlants:CDY15373 |
| ProteinID:CDY15373 | ProteinID:CDY15373.1 | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00085669001 | InterPro:IBR_dom | InterPro:IPR001841 |
| InterPro:IPR013083 | PFAM:PF01485 | PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF177 | SMART:SM00647 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EEE0B7 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC04g42500DBnaC04g42500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSU3]
Coordinates
chrLK032054:-:404565..406534
Molecular Weight (calculated)
63151.2 Da
IEP (calculated)
4.856
GRAVY (calculated)
-0.605
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MILEERTRKP PPKEKIETLI ITRQKNRVWV LSASYKSQNR LGAIVSPSIM DYSDDDGMLD IESGEDNLYG DDVDPGFAEE DNDNDSASQL SYVILKEEDI
101: HEHQRTDIEQ VSTVLSISQA ESIALLLHYQ WSTSKVEDEW FTDEERVRKT VGIVKEPVVD LNHTNIICGI CFESYFQKDI ATVSCGHPYC MTCWTGYITA
201: KITGGPGCLM VTCPEPSCSA VVGQDMIDKL ISNEEYKEKY YRYFFRSYVE SSGKKIKWCP SPGCEYAVDF GRGSENYDVS CLCSNDFCWN CSEDAHRPVG
301: CDTVSKWIFK NNDESENTTW ILANTKPCPK CKRQIEKNQG CSHMTCSAPC HFEFCWICLR AFPCPGDCNK FKGGDNEAEN KREMVKADMY RYMHYYERWA
401: SNQSSRLTAK RDLEKLQSVQ LKQLNDKQDT PETQLQFIVD AWLQIIECRR VLKWTFAYGY YLPQHEHAKK EFFEYLQGEA QDGLERLHHC AEVEFRQFVS
501: ETGDPSKDFN DFRMKLTGLT RVTKTYFENL VEALENGLAD VEQMRAK
101: HEHQRTDIEQ VSTVLSISQA ESIALLLHYQ WSTSKVEDEW FTDEERVRKT VGIVKEPVVD LNHTNIICGI CFESYFQKDI ATVSCGHPYC MTCWTGYITA
201: KITGGPGCLM VTCPEPSCSA VVGQDMIDKL ISNEEYKEKY YRYFFRSYVE SSGKKIKWCP SPGCEYAVDF GRGSENYDVS CLCSNDFCWN CSEDAHRPVG
301: CDTVSKWIFK NNDESENTTW ILANTKPCPK CKRQIEKNQG CSHMTCSAPC HFEFCWICLR AFPCPGDCNK FKGGDNEAEN KREMVKADMY RYMHYYERWA
401: SNQSSRLTAK RDLEKLQSVQ LKQLNDKQDT PETQLQFIVD AWLQIIECRR VLKWTFAYGY YLPQHEHAKK EFFEYLQGEA QDGLERLHHC AEVEFRQFVS
501: ETGDPSKDFN DFRMKLTGLT RVTKTYFENL VEALENGLAD VEQMRAK
001: MDFSDDDMID NKSGEENYSY GGGNESDDYN DVVDTIIPSE KSYVILKEED ILKLQRDDIE RVSSILSLSQ VEVIVLLLHY NWCVSKVEDE WFTDEERIRK
101: AVGLLKEPVV DFNGGEKDKK CRKVNIQCGI CFESYTREEI ARVSCGHPYC KTCWAGYITT KIEDGPGCLR VKCPEPSCSA AVGKDMIEDV TETKVNEKYS
201: RYILRSYVED GKKIKWCPSP GCGYAVEFGG SESSSYDVSC LCSYRFCWNC SEDAHSPVDC DTVSKWIFKN QDESENKNWM LANSKPCPEC KRPIEKNDGC
301: NHMTCSAPCG HEFCWICLKA YRRHSGACNR FVVEQAESKR ALLQSEIKRY THYYVRWAEN QSSRLKAMRD LEKLQSVQLK ELSDNQCTSE TQLQFTVDAW
401: LQIIECRRVL KWTYAYGYYL QDLPKRKFFE YLQGEAESGL ERLHHCAENE LKQFFIKSED PSDTFNAFRM KLTGLTTVTK TYFENLVKAL ENGLVDVTHN
501: EFPPDNETKS TQEKYEEYQD YEDDFLETQR LYDEALLSGC YYD
101: AVGLLKEPVV DFNGGEKDKK CRKVNIQCGI CFESYTREEI ARVSCGHPYC KTCWAGYITT KIEDGPGCLR VKCPEPSCSA AVGKDMIEDV TETKVNEKYS
201: RYILRSYVED GKKIKWCPSP GCGYAVEFGG SESSSYDVSC LCSYRFCWNC SEDAHSPVDC DTVSKWIFKN QDESENKNWM LANSKPCPEC KRPIEKNDGC
301: NHMTCSAPCG HEFCWICLKA YRRHSGACNR FVVEQAESKR ALLQSEIKRY THYYVRWAEN QSSRLKAMRD LEKLQSVQLK ELSDNQCTSE TQLQFTVDAW
401: LQIIECRRVL KWTYAYGYYL QDLPKRKFFE YLQGEAESGL ERLHHCAENE LKQFFIKSED PSDTFNAFRM KLTGLTTVTK TYFENLVKAL ENGLVDVTHN
501: EFPPDNETKS TQEKYEEYQD YEDDFLETQR LYDEALLSGC YYD
Arabidopsis Description
ARI9Probable E3 ubiquitin-protein ligase ARI9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKC3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.