Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84781 | Canola | nucleus | 97.49 | 98.01 |
| CDY15392 | Canola | nucleus | 94.43 | 94.43 |
| CDY19083 | Canola | nucleus | 93.54 | 93.87 |
| AT2G31510.1 | Thale cress | nucleus | 91.56 | 90.75 |
| CDY34490 | Canola | cytosol | 17.06 | 77.24 |
| CDY47704 | Canola | nucleus | 77.2 | 77.06 |
| CDX86547 | Canola | nucleus | 76.48 | 76.9 |
| CDY63791 | Canola | nucleus | 76.3 | 76.85 |
| CDY10162 | Canola | nucleus | 76.48 | 76.76 |
| Solyc06g073340.2.1 | Tomato | nucleus | 70.38 | 71.27 |
| PGSC0003DMT400069483 | Potato | nucleus | 70.74 | 70.99 |
| VIT_05s0102g00160.t01 | Wine grape | nucleus | 73.61 | 69.85 |
| KRH23186 | Soybean | nucleus | 73.61 | 69.61 |
| KRH10154 | Soybean | nucleus | 73.61 | 69.61 |
| Os04t0492100-01 | Rice | nucleus | 57.63 | 68.01 |
| KRH29654 | Soybean | nucleus | 70.38 | 66.89 |
| Zm00001d003207_P001 | Maize | nucleus | 70.74 | 66.89 |
| GSMUA_Achr9P07970_001 | Banana | nucleus | 66.25 | 66.85 |
| GSMUA_Achr6P28580_001 | Banana | nucleus | 67.15 | 66.79 |
| KRH24651 | Soybean | nucleus | 70.2 | 66.72 |
| EES11042 | Sorghum | nucleus | 70.56 | 66.72 |
| Zm00001d025750_P011 | Maize | extracellular | 70.56 | 66.72 |
| GSMUA_Achr8P28870_001 | Banana | nucleus | 70.2 | 66.61 |
| TraesCS6B01G245900.2 | Wheat | nucleus | 69.84 | 66.27 |
| HORVU6Hr1G055260.4 | Barley | nucleus | 70.02 | 66.21 |
| TraesCS6D01G198600.5 | Wheat | nucleus | 70.02 | 66.21 |
| CDY16406 | Canola | nucleus | 64.99 | 66.18 |
| TraesCS2A01G349600.1 | Wheat | nucleus | 69.84 | 66.04 |
| TraesCS2D01G348000.2 | Wheat | nucleus | 69.84 | 66.04 |
| TraesCS6A01G216900.1 | Wheat | nucleus | 69.84 | 66.04 |
| TraesCS2B01G368000.2 | Wheat | nucleus | 69.66 | 65.87 |
| CDY57807 | Canola | nucleus | 66.43 | 65.6 |
| CDX79440 | Canola | cytosol | 20.11 | 65.5 |
| GSMUA_Achr3P16920_001 | Banana | nucleus | 68.76 | 65.25 |
| CDY68344 | Canola | nucleus | 57.09 | 63.86 |
| CDX70415 | Canola | nucleus | 59.96 | 63.62 |
| CDX78438 | Canola | nucleus | 54.58 | 61.41 |
| CDX91196 | Canola | nucleus | 55.48 | 60.71 |
| CDY68345 | Canola | cytosol | 47.58 | 60.36 |
| CDX84759 | Canola | nucleus | 55.12 | 58.93 |
| CDY61443 | Canola | nucleus | 57.09 | 58.89 |
| CDY15373 | Canola | nucleus | 57.27 | 58.32 |
| CDY42068 | Canola | nucleus | 46.86 | 57.11 |
| CDX79439 | Canola | nucleus | 33.21 | 56.57 |
| HORVU2Hr1G085060.3 | Barley | cytosol | 65.35 | 54.41 |
| CDY15374 | Canola | nucleus | 55.3 | 53.75 |
| CDY34512 | Canola | cytosol, nucleus, plastid | 27.83 | 52.72 |
| Zm00001d046141_P001 | Maize | cytosol | 25.67 | 50.35 |
| CDY47702 | Canola | cytosol | 36.09 | 38.58 |
| CDY10159 | Canola | cytosol | 35.91 | 37.88 |
| CDX99146 | Canola | nucleus | 24.6 | 30.72 |
| CDX99147 | Canola | nucleus | 18.49 | 29.1 |
| CDX84438 | Canola | cytosol | 18.49 | 27.99 |
| CDY00148 | Canola | nucleus | 23.7 | 27.27 |
| CDY40734 | Canola | nucleus | 23.16 | 27.04 |
| CDY20037 | Canola | nucleus | 24.96 | 26.53 |
| CDY44786 | Canola | nucleus | 22.8 | 26.35 |
| CDY49768 | Canola | nucleus | 22.26 | 25.83 |
| CDY03991 | Canola | nucleus | 22.44 | 25.83 |
| CDY49559 | Canola | nucleus | 26.75 | 25.6 |
| CDX75425 | Canola | nucleus | 27.11 | 25.55 |
| CDX69049 | Canola | nucleus | 26.93 | 25.13 |
| CDX71262 | Canola | nucleus | 26.03 | 24.96 |
| CDY41533 | Canola | nucleus | 22.62 | 23.73 |
| CDY39850 | Canola | nucleus | 18.67 | 23.32 |
| CDY31353 | Canola | nucleus | 18.31 | 22.92 |
| CDY41534 | Canola | nucleus | 7.0 | 21.08 |
| CDX69926 | Canola | cytosol, mitochondrion, nucleus | 24.06 | 19.97 |
| CDX84439 | Canola | nucleus | 23.16 | 19.66 |
| CDY21562 | Canola | nucleus | 23.16 | 19.43 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | GO:A0A078GH18 | UniProt:A0A078GH18 | EnsemblPlants:CDY23938 |
| ProteinID:CDY23938 | ProteinID:CDY23938.1 | ncoils:Coil | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00024442001 | InterPro:IBR_dom |
| InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF01485 | PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF177 |
| SMART:SM00647 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EB66C8 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g17530DBnaC03g17530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GH18]
Coordinates
chrLK032152:+:47608..52315
Molecular Weight (calculated)
63693.8 Da
IEP (calculated)
4.663
GRAVY (calculated)
-0.712
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGDDMLDM YSGEDDFYSD DYKDSDNDDD DDDDDGEPDY GFVEEDADDS AMIASHRSQK NYCVLREEDI HRHQVDDIER VSVVLSITEV EASILLRHYH
101: WSVGKVHDEW FADEERVRNT VGILENPVVP PSDDDTELTC GICFDSYPPE NIVSVSCGHP FCTTCWTGYI STTINDGPGC LMLRCPDPSC LAAVGHDMVD
201: KLASGEDKEK YNRYFLRSYI EDNRKMKWCP APGCDYAIDF VAGSGNFDVS CLCSFSFCWN CTEESHRPVD CSTVSKWILK NSAESENMNW ILANSKPCPR
301: CKRPIEKNQG CMHMTCTPPC KYEFCWLCLG AWMDHGERTG GFYACNRYEV AKQEGQYDET ERRREMAKNS LERYTHYYER WASNQTSRQK AMTDLQQLQT
401: HNLERLSDKQ CTPESQLKFI LEAWLQIIEC RRVLKWTYAY GYYLPDHEHA KRVFFEYLQG EAESGLERLH QCVEKDLLQF LNAEGPSKDF NDFRTKLAGL
501: TRQAVTKNYF ENLMKALENG LADVDSHAAC SSKSTSSKST GCSSKTRGKG KGSSRTG
101: WSVGKVHDEW FADEERVRNT VGILENPVVP PSDDDTELTC GICFDSYPPE NIVSVSCGHP FCTTCWTGYI STTINDGPGC LMLRCPDPSC LAAVGHDMVD
201: KLASGEDKEK YNRYFLRSYI EDNRKMKWCP APGCDYAIDF VAGSGNFDVS CLCSFSFCWN CTEESHRPVD CSTVSKWILK NSAESENMNW ILANSKPCPR
301: CKRPIEKNQG CMHMTCTPPC KYEFCWLCLG AWMDHGERTG GFYACNRYEV AKQEGQYDET ERRREMAKNS LERYTHYYER WASNQTSRQK AMTDLQQLQT
401: HNLERLSDKQ CTPESQLKFI LEAWLQIIEC RRVLKWTYAY GYYLPDHEHA KRVFFEYLQG EAESGLERLH QCVEKDLLQF LNAEGPSKDF NDFRTKLAGL
501: TRQAVTKNYF ENLMKALENG LADVDSHAAC SSKSTSSKST GCSSKTRGKG KGSSRTG
001: MDSEEDMLDA HDMESGEDDF YSGGTDDCND SDDGEPDYGF VEEDADDSAM IASHRSQKNF CVLREEDIRR HQMDNIERVS VVLSITEVEA SILLRHFHWS
101: VGRVHDEWFA DEERVRKTVG ILESHVVPPS DDSELTCGIC FDSYPPEKIA SVSCGHPFCT TCWTGYISTT INDGPGCLML RCPDPSCLAA VGHDMVDKLA
201: SEDEKEKYNR YFLRSYIEDN RKMKWCPAPG CDFAIDFVAG SGNYDVSCLC SFSFCWNCTE EAHRPVDCST VSKWILKNSA ESENMNWILA NSKPCPRCKR
301: PIEKNQGCMH MTCTPPCKYE FCWLCLGAWM DHGERTGGFY ACNRYEVAKQ EGQYDETERR REMAKNSLER YTHYYERWAS NQTSRQKAMA DLQQAQMQNL
401: EKLSDKQCTP ESQLKFILEA WLQIIECRRV LKWTYAYGYY LPEHEHAKRQ FFEYLQGEAE SGLERLHQCV EKDLVQFLIA EGPSKDFNDF RTKLAGLTSV
501: TKNYFENLVK ALENGLADVD SHAACSSKST SSKSTGCSSK TRGKGKGSSR TGGSSRNPDD NL
101: VGRVHDEWFA DEERVRKTVG ILESHVVPPS DDSELTCGIC FDSYPPEKIA SVSCGHPFCT TCWTGYISTT INDGPGCLML RCPDPSCLAA VGHDMVDKLA
201: SEDEKEKYNR YFLRSYIEDN RKMKWCPAPG CDFAIDFVAG SGNYDVSCLC SFSFCWNCTE EAHRPVDCST VSKWILKNSA ESENMNWILA NSKPCPRCKR
301: PIEKNQGCMH MTCTPPCKYE FCWLCLGAWM DHGERTGGFY ACNRYEVAKQ EGQYDETERR REMAKNSLER YTHYYERWAS NQTSRQKAMA DLQQAQMQNL
401: EKLSDKQCTP ESQLKFILEA WLQIIECRRV LKWTYAYGYY LPEHEHAKRQ FFEYLQGEAE SGLERLHQCV EKDLVQFLIA EGPSKDFNDF RTKLAGLTSV
501: TKNYFENLVK ALENGLADVD SHAACSSKST SSKSTGCSSK TRGKGKGSSR TGGSSRNPDD NL
Arabidopsis Description
ARI7Probable E3 ubiquitin-protein ligase ARI7 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.