CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018221.1-P	Field mustard	cytosol	93.95	93.32
CDX99147	Canola	nucleus	73.77	92.94
Bra038276.1-P	Field mustard	cytosol	94.62	69.98
AT5G08730.1	Thale cress	cytosol	53.14	47.4
CDX84438	Canola	cytosol	33.86	41.03
CDY40734	Canola	nucleus	43.72	40.88
CDY44786	Canola	nucleus	44.17	40.87
CDY21562	Canola	nucleus	52.02	34.94
CDY41533	Canola	nucleus	41.26	34.65
CDX69926	Canola	cytosol, mitochondrion, nucleus	49.1	32.64
CDY39850	Canola	nucleus	32.06	32.06
CDY31353	Canola	nucleus	31.39	31.46
CDY68345	Canola	cytosol	26.68	27.11
CDY68344	Canola	nucleus	29.82	26.71
CDX70415	Canola	nucleus	31.39	26.67
CDX84439	Canola	nucleus	38.79	26.37
CDX78438	Canola	nucleus	28.7	25.86
CDX79439	Canola	nucleus	18.83	25.69
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	29.37	25.59
CDY34490	Canola	cytosol	6.95	25.2
CDY63791	Canola	nucleus	31.17	25.14
CDX86547	Canola	nucleus	31.17	25.09
CDY15392	Canola	nucleus	30.72	24.6
CDY23938	Canola	nucleus	30.72	24.6
CDX84759	Canola	nucleus	28.7	24.57
CDY47704	Canola	nucleus	30.72	24.55
CDX84781	Canola	nucleus	30.49	24.55
CDY10162	Canola	nucleus	30.49	24.5
CDY19083	Canola	nucleus	30.49	24.5
CDY16406	Canola	nucleus	30.04	24.5
CDY42068	Canola	nucleus	24.66	24.07
KRH24184	Soybean	nucleus	28.03	23.95
CDY57807	Canola	nucleus	30.27	23.94
CDX91196	Canola	nucleus	27.13	23.77
CDY61443	Canola	nucleus	28.48	23.52
CDY15373	Canola	nucleus	28.7	23.4
CDX79440	Canola	cytosol	8.97	23.39
CDY41534	Canola	nucleus	9.64	23.24
CDY47702	Canola	cytosol	26.23	22.46
CDY15374	Canola	nucleus	28.48	22.16
CDY10159	Canola	cytosol	26.23	22.16
CDY00148	Canola	nucleus	20.63	19.01
CDY20037	Canola	nucleus	21.75	18.51
CDY49768	Canola	nucleus	18.83	17.5
CDY03991	Canola	nucleus	18.61	17.15
CDY34512	Canola	cytosol, nucleus, plastid	11.21	17.01
CDX71262	Canola	nucleus	21.3	16.35
CDY49559	Canola	nucleus	21.3	16.32
CDX75425	Canola	nucleus	19.73	14.89
CDX69049	Canola	nucleus	19.73	14.74

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	GO:A0A078EDC0	EnsemblPlants:CDX99146	ProteinID:CDX99146
ProteinID:CDX99146.1	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00107306001	InterPro:IBR_dom	InterPro:IPR013083	PFAM:PF01485	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213
SMART:SM00647	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EECC4C	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaA06g18370D

Coordinates

chrLK031908:-:683161..684588

Molecular Weight (calculated)

50669.9 Da

IEP (calculated)

4.728

GRAVY (calculated)

-0.331

Length

446 amino acids

Sequence
(BLAST)

001: METDGQRVYS VLTTNEVGEK MTSEINQISE VFLLSKSDAT LILISLRWNS FKASDRLGDD KEKLLSDLGL VKVFSSCQEN DSVSSFAGQE NLVSTPFCSH
101: KFSETCWKSH LNNLLTEEEE RVVLCPNPDC VAPVGPDTIE KLTEPAVKMM YDRYVLGSFV EANKESIKWC PAPGCEYAIE LHEDLLGDDD ESSLDFGVVC
201: LCGHTFCWSC TLESHRPVTC KEASVWSSST LDTLKSNAWL LENTKRCPNC NCPVQRTDDP VLRMITCICS CSFCWRCLLS KEEHNGNWNC VELFFQLSMR
301: QVDDSSYLRL WEKCLEEYEN SKSDLKAIEE NGVPRLTDNS SFNERDVDAV KEATLVMVQC RLVLKWSCVY EYFIAMHQSA KTQYVKHLQG EAKKTLLRHK
401: ATQEELMNKA LTPGYFSSFK VELSNSSTIT GNYFHEYVKT LESGFP

Best Arabidopsis Sequence Match ( AT5G08730.1 )
(BLAST)

001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE

Arabidopsis Description

ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.