Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84759 | Canola | nucleus | 92.35 | 57.97 |
| AT2G31780.1 | Thale cress | nucleus | 64.83 | 47.86 |
| CDY68344 | Canola | nucleus | 68.5 | 44.98 |
| CDY68345 | Canola | cytosol | 56.27 | 41.91 |
| CDY15373 | Canola | nucleus | 69.11 | 41.32 |
| CDY42068 | Canola | nucleus | 56.88 | 40.7 |
| CDY15374 | Canola | nucleus | 70.95 | 40.49 |
| AT2G31760.1 | Thale cress | nucleus | 62.69 | 39.88 |
| AT2G31770.1 | Thale cress | nucleus | 61.77 | 37.2 |
| CDY63791 | Canola | nucleus | 57.19 | 33.82 |
| CDX84781 | Canola | nucleus | 57.19 | 33.75 |
| CDX86547 | Canola | nucleus | 56.57 | 33.39 |
| CDY23938 | Canola | nucleus | 56.57 | 33.21 |
| CDY15392 | Canola | nucleus | 56.57 | 33.21 |
| CDY10162 | Canola | nucleus | 56.27 | 33.15 |
| CDY47704 | Canola | nucleus | 56.27 | 32.97 |
| CDY19083 | Canola | nucleus | 55.96 | 32.97 |
| CDX70415 | Canola | nucleus | 51.99 | 32.38 |
| Zm00001d046141_P001 | Maize | cytosol | 26.61 | 30.63 |
| CDY16406 | Canola | nucleus | 50.76 | 30.35 |
| CDY61443 | Canola | nucleus | 49.85 | 30.19 |
| Solyc06g073340.2.1 | Tomato | nucleus | 50.76 | 30.18 |
| PGSC0003DMT400069483 | Potato | nucleus | 50.15 | 29.55 |
| GSMUA_Achr9P07970_001 | Banana | nucleus | 49.85 | 29.53 |
| CDX78438 | Canola | nucleus | 44.65 | 29.49 |
| CDX91196 | Canola | nucleus | 45.87 | 29.47 |
| CDY57807 | Canola | nucleus | 50.46 | 29.26 |
| HORVU6Hr1G055260.4 | Barley | nucleus | 52.29 | 29.03 |
| VIT_05s0102g00160.t01 | Wine grape | nucleus | 51.99 | 28.96 |
| TraesCS6B01G245900.2 | Wheat | nucleus | 51.99 | 28.96 |
| GSMUA_Achr6P28580_001 | Banana | nucleus | 49.54 | 28.93 |
| TraesCS6A01G216900.1 | Wheat | nucleus | 51.99 | 28.86 |
| TraesCS6D01G198600.5 | Wheat | nucleus | 51.68 | 28.69 |
| GSMUA_Achr8P28870_001 | Banana | nucleus | 51.07 | 28.45 |
| TraesCS2B01G368000.2 | Wheat | nucleus | 50.76 | 28.18 |
| EES11042 | Sorghum | nucleus | 50.76 | 28.18 |
| GSMUA_Achr3P16920_001 | Banana | nucleus | 50.46 | 28.11 |
| TraesCS2D01G348000.2 | Wheat | nucleus | 50.46 | 28.01 |
| TraesCS2A01G349600.1 | Wheat | nucleus | 50.46 | 28.01 |
| Zm00001d003207_P001 | Maize | nucleus | 50.46 | 28.01 |
| Zm00001d025750_P011 | Maize | extracellular | 50.46 | 28.01 |
| KRH23186 | Soybean | nucleus | 49.85 | 27.67 |
| KRH10154 | Soybean | nucleus | 49.24 | 27.33 |
| KRH24651 | Soybean | nucleus | 48.62 | 27.13 |
| KRH29654 | Soybean | nucleus | 48.32 | 26.96 |
| Os04t0492100-01 | Rice | nucleus | 34.56 | 23.94 |
| CDX99147 | Canola | nucleus | 25.38 | 23.45 |
| CDY34512 | Canola | cytosol, nucleus, plastid | 20.49 | 22.79 |
| HORVU2Hr1G085060.3 | Barley | cytosol | 45.57 | 22.27 |
| CDY47702 | Canola | cytosol | 33.33 | 20.92 |
| CDY10159 | Canola | cytosol | 33.33 | 20.64 |
| CDX84438 | Canola | cytosol | 22.32 | 19.84 |
| CDX99146 | Canola | nucleus | 25.69 | 18.83 |
| CDY00148 | Canola | nucleus | 25.69 | 17.36 |
| CDY20037 | Canola | nucleus | 27.52 | 17.18 |
| CDY49768 | Canola | nucleus | 25.08 | 17.08 |
| CDY03991 | Canola | nucleus | 25.08 | 16.94 |
| CDX75425 | Canola | nucleus | 28.75 | 15.91 |
| CDY44786 | Canola | nucleus | 23.24 | 15.77 |
| CDX69049 | Canola | nucleus | 28.75 | 15.75 |
| CDY49559 | Canola | nucleus | 27.83 | 15.64 |
| CDY40734 | Canola | nucleus | 22.63 | 15.51 |
| CDX71262 | Canola | nucleus | 27.22 | 15.32 |
| CDY41533 | Canola | nucleus | 23.85 | 14.69 |
| CDY39850 | Canola | nucleus | 19.88 | 14.57 |
| CDY31353 | Canola | nucleus | 18.65 | 13.71 |
| CDY21562 | Canola | nucleus | 25.38 | 12.5 |
| CDX84439 | Canola | nucleus | 23.55 | 11.74 |
| CDX69926 | Canola | cytosol, mitochondrion, nucleus | 23.55 | 11.48 |
| CDY34490 | Canola | cytosol | 3.67 | 9.76 |
| CDX79440 | Canola | cytosol | 1.53 | 2.92 |
| CDY41534 | Canola | nucleus | 0.92 | 1.62 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | GO:A0A078CTR8 | EnsemblPlants:CDX79439 | ProteinID:CDX79439 |
| ProteinID:CDX79439.1 | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00132171001 | InterPro:IBR_dom |
| InterPro:IPR001841 | InterPro:IPR001878 | InterPro:IPR013083 | PFAM:PF00097 | PFAM:PF01485 | PFscan:PS50089 |
| PFscan:PS50158 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF177 | SMART:SM00647 | SUPFAM:SSF57850 | UniPathway:UPA00143 |
| UniParc:UPI0004EEBFA8 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_CCHC | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : |
Description
BnaC03g17750D
Coordinates
chrLK031818:+:54304..55287
Molecular Weight (calculated)
37077.0 Da
IEP (calculated)
4.237
GRAVY (calculated)
-0.519
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSDDDGMV DTDSGEESLL SDNPVDSDYE FTDQDMDNAS TSKRSQISYL VLKEEDVSKH QRTDIEQVST VLSISQVESI VLLLHYQWNV SKVEDEWFTG
101: EEKVRELVGM LKEPVVDLND REVNIECGIC FDSYTQKEVT TLSCGHPYCN VCWTGYITTT INDGPGCLTV KCPEPSCSAV TACQYMVDKV ITDKEHKEKY
201: YRYFVRSYVE ASGNKIKWCP SPGCEYAIDF ASGSGSEHYD VSCLCSYEFC WNCGEDAHRP VDCETVSKWI SKNTDVSENT NWILANTKPC PNCKRQIEKS
301: MGCNHMGCSI LLELSWSNER SQELPQI
101: EEKVRELVGM LKEPVVDLND REVNIECGIC FDSYTQKEVT TLSCGHPYCN VCWTGYITTT INDGPGCLTV KCPEPSCSAV TACQYMVDKV ITDKEHKEKY
201: YRYFVRSYVE ASGNKIKWCP SPGCEYAIDF ASGSGSEHYD VSCLCSYEFC WNCGEDAHRP VDCETVSKWI SKNTDVSENT NWILANTKPC PNCKRQIEKS
301: MGCNHMGCSI LLELSWSNER SQELPQI
001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
Arabidopsis Description
ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.