Factsheet for Os04t0492100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11042	Sorghum	nucleus	94.28	75.55
Zm00001d025750_P011	Maize	extracellular	93.86	75.21
Zm00001d003207_P001	Maize	nucleus	93.64	75.04
TraesCS2B01G368000.2	Wheat	nucleus	92.58	74.19
TraesCS2A01G349600.1	Wheat	nucleus	92.37	74.02
TraesCS2D01G348000.2	Wheat	nucleus	92.37	74.02
TraesCS6B01G245900.2	Wheat	nucleus	86.02	69.17
TraesCS6D01G198600.5	Wheat	nucleus	85.59	68.59
HORVU6Hr1G055260.4	Barley	nucleus	85.59	68.59
TraesCS6A01G216900.1	Wheat	nucleus	85.38	68.42
GSMUA_Achr8P28870_001	Banana	nucleus	81.99	65.93
GSMUA_Achr6P28580_001	Banana	nucleus	77.97	65.71
Bra021726.1-P	Field mustard	nucleus	69.7	65.54
GSMUA_Achr9P07970_001	Banana	nucleus	76.48	65.4
HORVU2Hr1G085060.3	Barley	cytosol	92.16	65.02
GSMUA_Achr3P16920_001	Banana	nucleus	80.08	64.4
VIT_05s0102g00160.t01	Wine grape	nucleus	78.39	63.03
CDY34490	Canola	cytosol	16.1	61.79
KRH23186	Soybean	nucleus	76.69	61.46
CDX79440	Canola	cytosol	22.25	61.4
KRH10154	Soybean	nucleus	76.48	61.29
KRH29654	Soybean	nucleus	76.06	61.26
KRH24651	Soybean	nucleus	75.42	60.75
Solyc06g073340.2.1	Tomato	nucleus	69.28	59.45
CDY15392	Canola	nucleus	69.92	59.25
Bra022845.1-P	Field mustard	nucleus	68.86	58.77
CDY19083	Canola	nucleus	69.07	58.74
PGSC0003DMT400069483	Potato	nucleus	69.07	58.74
CDX84781	Canola	nucleus	68.86	58.66
AT2G31510.1	Thale cress	nucleus	69.7	58.54
Zm00001d046141_P001	Maize	cytosol	35.17	58.45
CDY23938	Canola	nucleus	68.01	57.63
Bra015463.1-P	Field mustard	nucleus	67.16	56.81
CDY47704	Canola	nucleus	67.16	56.81
CDX86547	Canola	nucleus	65.47	55.78
CDY10162	Canola	nucleus	65.47	55.68
CDY63791	Canola	nucleus	64.62	55.15
Os09t0513800-01	Rice	cytosol, mitochondrion, nucleus	62.08	53.86
CDY68345	Canola	cytosol	49.79	53.53
AT1G05890.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	65.89	52.36
Os08t0540300-01	Rice	nucleus	64.83	50.41
CDX70415	Canola	nucleus	54.03	48.57
Bra006112.1-P	Field mustard	nucleus	54.24	47.94
CDY68344	Canola	nucleus	50.0	47.39
Bra021742.1-P	Field mustard	nucleus	49.58	46.99
CDX78438	Canola	nucleus	48.94	46.67
Bra023338.1-P	Field mustard	nucleus	54.24	46.38
CDX91196	Canola	nucleus	50.0	46.37
CDY61443	Canola	nucleus	51.91	45.37
AT2G31760.1	Thale cress	nucleus	48.94	44.94
AT2G31770.1	Thale cress	nucleus	50.64	44.01
CDX84759	Canola	nucleus	48.52	43.95
Bra022865.1-P	Field mustard	nucleus	48.52	43.95
AT2G31780.1	Thale cress	nucleus	41.1	43.79
Bra005642.1-P	Field mustard	nucleus	47.25	43.73
CDY15373	Canola	nucleus	49.79	42.96
CDY15374	Canola	nucleus	51.91	42.76
CDY42068	Canola	nucleus	39.19	40.48
Os09t0559000-00	Rice	cytosol	41.31	37.14
CDY34512	Canola	cytosol, nucleus, plastid	22.03	35.37
CDX79439	Canola	nucleus	23.94	34.56
Os03t0625800-01	Rice	cytosol	25.0	21.85
Os03t0625933-00	Rice	nucleus	15.04	21.58
Os03t0233500-01	Rice	nucleus	26.91	20.75
Os03t0626100-01	Rice	nucleus	23.73	19.65
Os09t0559100-00	Rice	nucleus	4.45	10.66

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	ProteinID:BAF15088.1	ProteinID:BAS89852.1	InterPro:E3_UB_ligase_RBR
GO:GO:0000151	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031624	GO:GO:0032436	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom
InterPro:IPR001841	InterPro:IPR001876	InterPro:IPR013083	EnsemblPlantsGene:Os04g0492100	EnsemblPlants:Os04t0492100-01	PFAM:PF01485
ScanProsite:PS01358	PFscan:PS50089	PFscan:PS50199	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	UniProt:Q0JC49
SMART:SM00547	SMART:SM00647	SUPFAM:SSF57850	SUPFAM:SSF90209	UniParc:UPI0000DD9151	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

Similar to H0425E08.1 protein. (Os04t0492100-01)

Coordinates

chr4:+:24584943..24588712

Molecular Weight (calculated)

53435.4 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.715

Length

472 amino acids

Sequence
(BLAST)

001: GFPEKLIEMP NDRELTCGIC FENCPRTSMS AAACGHPFCS ACWRGYISTS INDGPGCLML RCPDPSCTAA VGQDMINSLA DDEDREKYGR YLRRSYIEDN
101: RKTKWCPAPG CEYAVEFVMG SGSYDVNCNC SYGFCWNCTE EAHRPVDCAT VSKWILKNSA ESENMNWILA NSKPCPKCKR PIEKNQGCMH ITCTPPCKFE
201: FCWLCLGPWS EHGERTGGFY ACNRYEAARQ EGAYDESERR REMAKNSLER YTHYYERWAA NQSSRQKALG DLLSLQNDKL EKLSDIQSQP ESQLKFIIEA
301: WLQIVECRRV LKWTYAYGFY LPEHEHAKRQ FFEYLQGEAE SGLERLHQCA EKELQVYLEA ESPSKDFNDF RTKLAGLTSV TRNYFENLVR ALETGLNDVG
401: PSTSHGTCSK SATSKSLGSK SKSSKSRASS TSSKTGGSSR GVDESNIWTC DQCTYANPRS ARNCQACNNQ HR

Best Arabidopsis Sequence Match ( AT1G65430.1 )
(BLAST)

001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR

Arabidopsis Description

ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.