Factsheet for Os08t0540300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15269	Sorghum	nucleus	82.37	83.89
TraesCS7B01G165100.2	Wheat	nucleus	81.38	81.79
TraesCS7D01G267600.2	Wheat	nucleus	80.89	81.29
TraesCS7A01G267200.4	Wheat	nucleus	80.72	81.26
Zm00001d052709_P002	Maize	plastid	62.6	77.39
Zm00001d031694_P003	Maize	nucleus	80.56	74.77
HORVU7Hr1G056020.3	Barley	cytosol	34.1	73.4
HORVU7Hr1G056040.5	Barley	nucleus, plastid	80.07	73.19
Os09t0513800-01	Rice	cytosol, mitochondrion, nucleus	64.09	71.51
Os04t0492100-01	Rice	nucleus	50.41	64.83
Os09t0559000-00	Rice	cytosol	38.22	44.19
Os09t0559100-00	Rice	nucleus	9.56	29.44
Os03t0625933-00	Rice	nucleus	14.99	27.66
Os03t0233500-01	Rice	nucleus	25.86	25.65
Os03t0625800-01	Rice	cytosol	21.91	24.63
Os03t0626100-01	Rice	nucleus	21.91	23.33

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:2.20.28.140	Gene3D:3.30.40.10	EntrezGene:4346186	ProteinID:BAD03091.1
ProteinID:BAD33150.1	ProteinID:BAF24296.1	ProteinID:BAT06484.1	InterPro:E3_UB_ligase_RBR	ProteinID:EEE69081.1	GO:GO:0000151
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031624	GO:GO:0032436	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR001876	InterPro:IPR013083	EnsemblPlantsGene:Os08g0540300	EnsemblPlants:Os08t0540300-01	PFAM:PF01485	ScanProsite:PS01358
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF154	UniProt:Q6ZIV0	SMART:SM00547	SMART:SM00647
SUPFAM:SSF57850	SUPFAM:SSF90209	UniParc:UPI0000212FD5	RefSeq:XP_015650118.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:

Description

Zinc finger, C6HC-type domain containing protein. (Os08t0540300-01)

Coordinates

chr8:+:27047369..27054956

Molecular Weight (calculated)

68825.7 Da

IEP (calculated)

4.463

GRAVY (calculated)

-0.702

Length

607 amino acids

Sequence
(BLAST)

001: MDSDAEMPMS SDEEMLDDED YYDYSDDMGE DDDGSGGGGG GDSDGEEEEE GDEELVGGDY EGREAEGSDE VVSRREQRYI VLTEKDINER QEEDIGKVSA
101: VLSIRREEAC VLLHHYKWNI SKLSDEWFAD EEKVRDIVGL LLNGIDLPNS RKLTCGICFE GYSSDVMSSA DCDHFYCHEC WEGYISAAIS DGPGCLSLRC
201: PDPSCGAMVL QNMINKLAKD DDKVRYARFI LRAYVEDSKK TKWCPAPDCT CAVEFVSDGN YDVSCNCKFS FCWNCTEEAH RPVNCETVSR WILKNSAESE
301: NMNWILANSK PCPKCKRPIE KNQGCMHMTC TPPCKFEFCW LCLGSWAEHG ERTGGFYACN RYESAKKEGV YDETEARRER AKNSLERYMH YYERWASNQT
401: SRQKAQADLQ KAEKEQLAKL TDVFGIPETQ LKFIIEAWSQ IIECRRVLKW TYAYGYYLDD KVKSEFFEYL QGEAESGLER LHQCAEKDLQ SFLTVRSDNT
501: EPAPSIAEFG DFRVKLAGLT SVTRNYFENL VQALEAGLED VHSTAQGTTS SNATNIPSKK AVTKGKTKKQ LPRTSSDNSD EGWPCERCTF INPSSVDACS
601: VCDKHRY

Best Arabidopsis Sequence Match ( AT1G65430.1 )
(BLAST)

001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR

Arabidopsis Description

ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.