Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0625800-01 | Rice | cytosol | 61.09 | 37.22 |
| Os03t0626100-01 | Rice | nucleus | 62.01 | 35.79 |
| TraesCS4D01G070400.1 | Wheat | nucleus | 58.05 | 35.77 |
| TraesCS4B01G071700.1 | Wheat | nucleus | 56.53 | 34.38 |
| EER93787 | Sorghum | nucleus | 54.41 | 33.46 |
| GSMUA_Achr5P01850_001 | Banana | nucleus | 41.34 | 25.23 |
| Solyc12g089000.1.1 | Tomato | nucleus | 39.51 | 24.21 |
| PGSC0003DMT400043486 | Potato | cytosol | 38.3 | 24.18 |
| Solyc04g079780.2.1 | Tomato | cytosol | 37.99 | 23.95 |
| PGSC0003DMT400039948 | Potato | nucleus | 39.21 | 23.76 |
| Solyc01g109280.2.1 | Tomato | nucleus | 42.55 | 23.73 |
| PGSC0003DMT400064832 | Potato | nucleus | 42.55 | 23.73 |
| CDX71262 | Canola | nucleus | 41.64 | 23.58 |
| CDX75425 | Canola | nucleus | 42.25 | 23.52 |
| Bra011524.1-P | Field mustard | nucleus | 42.25 | 23.52 |
| CDY49559 | Canola | nucleus | 41.34 | 23.37 |
| Bra001960.1-P | Field mustard | nucleus | 41.34 | 23.37 |
| CDX69049 | Canola | nucleus | 42.25 | 23.28 |
| AT3G27710.1 | Thale cress | nucleus | 37.99 | 23.28 |
| VIT_03s0063g02000.t01 | Wine grape | nucleus | 41.64 | 23.26 |
| VIT_18s0001g11740.t01 | Wine grape | cytosol | 39.21 | 23.24 |
| AT4G34370.1 | Thale cress | nucleus | 41.95 | 23.12 |
| Os03t0233500-01 | Rice | nucleus | 42.86 | 23.04 |
| KRH29521 | Soybean | nucleus | 40.43 | 22.93 |
| KRH24517 | Soybean | nucleus | 40.12 | 22.76 |
| AT2G16090.1 | Thale cress | nucleus | 40.12 | 22.26 |
| Bra039068.1-P | Field mustard | nucleus | 35.26 | 22.14 |
| Bra033024.1-P | Field mustard | nucleus | 35.26 | 22.05 |
| CDY20037 | Canola | nucleus | 34.95 | 21.95 |
| CDY03991 | Canola | nucleus | 31.61 | 21.49 |
| CDY49768 | Canola | nucleus | 31.31 | 21.46 |
| CDY00148 | Canola | nucleus | 30.09 | 20.45 |
| Os09t0559100-00 | Rice | nucleus | 10.64 | 17.77 |
| AT3G27720.1 | Thale cress | nucleus | 24.62 | 16.43 |
| Os09t0559000-00 | Rice | cytosol | 25.84 | 16.19 |
| Os09t0513800-01 | Rice | cytosol, mitochondrion, nucleus | 24.92 | 15.07 |
| Os04t0492100-01 | Rice | nucleus | 21.58 | 15.04 |
| Os08t0540300-01 | Rice | nucleus | 27.66 | 14.99 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | UniProt:A0A0P0W0Z4 | ProteinID:BAS85341.1 | InterPro:E3_UB_ligase_RBR |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 |
| InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os03g0625933 | EnsemblPlants:Os03t0625933-00 | PFAM:PF01485 |
| PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF150 | SMART:SM00647 | SUPFAM:SSF57850 | UniParc:UPI0003939249 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Similar to IBR domain containing protein, expressed. (Os03t0625933-00)
Coordinates
chr3:+:23827633..23831445
Molecular Weight (calculated)
36333.8 Da
IEP (calculated)
4.742
GRAVY (calculated)
-0.425
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDDEECFY DYEEEEEEEE EPGWDDGGGG DTMLVEEEAA LPERPVDCWA ITEESLPAAQ QQDLSMVMNL LYIKQHQARA LLIHHRWKME SILDHFDRKG
101: RDRMLRETGV VIQQQAEEKN GGGMAMAASP SPPPRPRSSV TCYVCFEDVS SDAVSTMDCG HCFCNDCWTE HFFACVNGGQ KQIRCMAVGC AAVCDEDVAQ
201: RLLGGRYPGA ARRLRGALLA SYVEDNAAAR WCPSAPHCGR AVRVDGGGGR WCCEVSCPCG ASFCFGCAAP AHSPCPCAMW ERWEAKCRGE SMNVDWILAN
301: TKSCPKCSKP IEKNGGCNHV RCKCGQCLW
101: RDRMLRETGV VIQQQAEEKN GGGMAMAASP SPPPRPRSSV TCYVCFEDVS SDAVSTMDCG HCFCNDCWTE HFFACVNGGQ KQIRCMAVGC AAVCDEDVAQ
201: RLLGGRYPGA ARRLRGALLA SYVEDNAAAR WCPSAPHCGR AVRVDGGGGR WCCEVSCPCG ASFCFGCAAP AHSPCPCAMW ERWEAKCRGE SMNVDWILAN
301: TKSCPKCSKP IEKNGGCNHV RCKCGQCLW
001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN
Arabidopsis Description
ARI1Probable E3 ubiquitin-protein ligase ARI1 [Source:UniProtKB/Swiss-Prot;Acc:Q949V6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.