Factsheet for TraesCS4D01G070400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G071700.1	Wheat	nucleus	93.45	92.24
TraesCS4D01G070600.1	Wheat	nucleus	60.67	60.22
Os03t0625933-00	Rice	nucleus	35.77	58.05
TraesCS4D01G069600.1	Wheat	nucleus	57.12	57.12
EER93787	Sorghum	nucleus	55.24	55.14
Solyc04g079780.2.1	Tomato	cytosol	41.39	42.34
PGSC0003DMT400043486	Potato	cytosol	41.2	42.23
AT3G27710.1	Thale cress	nucleus	42.13	41.9
VIT_18s0001g11740.t01	Wine grape	cytosol	42.7	41.08
CDX71262	Canola	nucleus	44.38	40.79
CDY00148	Canola	nucleus	36.7	40.5
Bra039068.1-P	Field mustard	nucleus	39.7	40.46
Bra001960.1-P	Field mustard	nucleus	44.01	40.38
CDY49559	Canola	nucleus	44.01	40.38
CDY20037	Canola	nucleus	39.33	40.08
GSMUA_Achr5P01850_001	Banana	nucleus	40.26	39.89
PGSC0003DMT400064832	Potato	nucleus	44.01	39.83
Solyc01g109280.2.1	Tomato	nucleus	44.01	39.83
PGSC0003DMT400039948	Potato	nucleus	40.07	39.41
VIT_03s0063g02000.t01	Wine grape	nucleus	43.45	39.39
Solyc12g089000.1.1	Tomato	nucleus	39.51	39.29
AT2G16090.1	Thale cress	nucleus	43.63	39.29
CDY03991	Canola	nucleus	35.58	39.26
CDY49768	Canola	nucleus	35.21	39.17
Bra011524.1-P	Field mustard	nucleus	43.07	38.92
CDX75425	Canola	nucleus	43.07	38.92
TraesCS4D01G238400.2	Wheat	nucleus	44.94	38.71
CDX69049	Canola	nucleus	43.07	38.53
KRH29521	Soybean	nucleus	41.57	38.28
AT3G27720.1	Thale cress	nucleus	35.21	38.13
KRH24517	Soybean	nucleus	41.39	38.1
Bra033024.1-P	Field mustard	nucleus	37.45	38.02
AT4G34370.1	Thale cress	nucleus	42.32	37.86
TraesCS7D01G073800.1	Wheat	nucleus	24.72	26.88
TraesCS5D01G305000.1	Wheat	nucleus	24.53	23.31
TraesCS7D01G267600.2	Wheat	nucleus	25.66	22.68
TraesCS6D01G198600.5	Wheat	nucleus	24.72	22.41
TraesCS6D01G402400.1	Wheat	nucleus	23.03	21.81
TraesCS2D01G348000.2	Wheat	nucleus	23.97	21.73
TraesCS5D01G370300.1	Wheat	nucleus	23.03	20.67

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR013083	PFAM:PF00097	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF207
SMART:SM00184	SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4D01G070400	EnsemblPlants:TraesCS4D01G070400.1	InterPro:Znf_C3HC4_RING-type
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:45699585..45703991

Molecular Weight (calculated)

61001.1 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.513

Length

534 amino acids

Sequence
(BLAST)

001: MASDDDCYDY EYDYDEDEEE EEEAMEADED GLFEDDTPMP DRPADCWAIT QESLSTAQQQ DLSMVMNLLN VKQHNARALL IHHRWKIDCI YDHLDRKGRD
101: RMFREAGIVL QENINGKALP SRVVNCMVCF DEFSVGAVSI MECGHYFCND CWTEHFKASV DSGKKQIRCM GVKCPVVCDE AVVQQLLAGK YPDAARRFDR
201: FLLESYLENN ESVKWCPSVP HCGRAIRVGA GERYTEVECP CGLGFCFACA AAAHSPCPCT MWDMWEVKCN GESETVNWIL ANTKSCPKCF KPIVKDGGCN
301: LVTCKCGQHL CWKCGGATGF AHNWDSIDGH SCNRFVGEEK KKVDNAKRNL HRYTHYYDRF KIHGDSHKLE HDMLGPAIDE RVKVLEALRD QSLIQDASWL
401: TEAHRGLLQS RQVLSRSYVF AYYMFGDDDK VRTWPANRHS LPIAQGLFEN YQEELESNVE RLSKVLATEY GPVPDEDDVR RDKQNAMNLT KIVQTRCGEI
501: YKCIQDELLP LLLDPMIIAA YRPRGPDKAK EFTA

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.