Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G298200.1 | Wheat | nucleus | 98.22 | 98.57 |
| TraesCS5B01G297300.1 | Wheat | nucleus | 98.4 | 98.4 |
| HORVU5Hr1G078470.2 | Barley | nucleus | 91.46 | 92.11 |
| Os09t0513800-01 | Rice | cytosol, mitochondrion, nucleus | 67.08 | 69.3 |
| TraesCS7D01G267600.2 | Wheat | nucleus | 66.01 | 61.42 |
| TraesCS2D01G348000.2 | Wheat | nucleus | 59.25 | 56.54 |
| TraesCS6D01G198600.5 | Wheat | nucleus | 57.83 | 55.18 |
| TraesCS7D01G073800.1 | Wheat | nucleus | 35.59 | 40.73 |
| TraesCS5D01G370300.1 | Wheat | nucleus | 38.79 | 36.64 |
| TraesCS6D01G402400.1 | Wheat | nucleus | 36.48 | 36.35 |
| TraesCS4D01G070600.1 | Wheat | nucleus | 24.02 | 25.09 |
| TraesCS4D01G070400.1 | Wheat | nucleus | 23.31 | 24.53 |
| TraesCS4D01G069600.1 | Wheat | nucleus | 22.78 | 23.97 |
| TraesCS4D01G238400.2 | Wheat | nucleus | 24.73 | 22.42 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR013083 |
| PFAM:PF01485 | PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF219 | SMART:SM00647 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:TraesCS5D01G305000 | EnsemblPlants:TraesCS5D01G305000.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16623 | SEG:seg |
Description
No Description!
Coordinates
chr5D:+:399977552..399984572
Molecular Weight (calculated)
63433.2 Da
IEP (calculated)
5.380
GRAVY (calculated)
-0.656
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDDEPWGA SDDDPVAVGD YYYDCSDGGS GGAGGGGEDE GSDCAGDDYE VREEVASMRE KRYAVLSEND IHERQEEAIR RVSSIFSIPR ESACILLRQY
101: KWNISKLSDE WFADEERVRH FVGLPTNGAV LPDCQELTCG ICFEGYSTSA LSSAGCGHLY CHECWEGYIS ASINDGPGCL SLRCPEPSCT AMVLEETINR
201: LAKDEEKVKY KQFLSCSYVE DNKKIKWCPA PDCTRAVEFL GDENYDVSCM CKFSFCWNCT EETHRPVSCE TVSKWILKNS AESENVNWII ANSKPCPKCK
301: RPIEKNHGCM HMTCRPPCKF QFCWLCLGDW SEHGSRTTGG NYACNRYEAD KKKGIYDEAE AQRERAKNSL VRYTHYFERW ASNQKSRQKA QGDLQKFESE
401: LAKLSDILGI PESQLKFIPE AWSQIVECRQ VLQWTYAYGY YLDDKAKNDF FVYLQGEAES GLERLHKCAE KDIHAILPKA GETEPLPSLQ DFNEFRVKLA
501: GLTSVTRNYF ENLVQALEAG LEDVRVTGGQ STSKKKARTA SKRKPSAKGK SGRNKKARIT IS
101: KWNISKLSDE WFADEERVRH FVGLPTNGAV LPDCQELTCG ICFEGYSTSA LSSAGCGHLY CHECWEGYIS ASINDGPGCL SLRCPEPSCT AMVLEETINR
201: LAKDEEKVKY KQFLSCSYVE DNKKIKWCPA PDCTRAVEFL GDENYDVSCM CKFSFCWNCT EETHRPVSCE TVSKWILKNS AESENVNWII ANSKPCPKCK
301: RPIEKNHGCM HMTCRPPCKF QFCWLCLGDW SEHGSRTTGG NYACNRYEAD KKKGIYDEAE AQRERAKNSL VRYTHYFERW ASNQKSRQKA QGDLQKFESE
401: LAKLSDILGI PESQLKFIPE AWSQIVECRQ VLQWTYAYGY YLDDKAKNDF FVYLQGEAES GLERLHKCAE KDIHAILPKA GETEPLPSLQ DFNEFRVKLA
501: GLTSVTRNYF ENLVQALEAG LEDVRVTGGQ STSKKKARTA SKRKPSAKGK SGRNKKARIT IS
001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
Arabidopsis Description
ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.