Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G305000.1 | Wheat | nucleus | 98.4 | 98.4 |
| TraesCS5A01G298200.1 | Wheat | nucleus | 97.86 | 98.21 |
| HORVU5Hr1G078470.2 | Barley | nucleus | 92.17 | 92.83 |
| Os09t0513800-01 | Rice | cytosol, mitochondrion, nucleus | 66.9 | 69.12 |
| TraesCS7B01G165100.2 | Wheat | nucleus | 66.37 | 61.76 |
| TraesCS2B01G368000.2 | Wheat | nucleus | 58.9 | 56.2 |
| TraesCS6B01G245900.2 | Wheat | nucleus | 57.47 | 55.03 |
| TraesCS6B01G472300.1 | Wheat | nucleus | 36.83 | 36.51 |
| TraesCS5B01G364000.1 | Wheat | nucleus | 38.61 | 36.47 |
| TraesCS4B01G071800.1 | Wheat | nucleus | 24.02 | 24.59 |
| TraesCS4B01G071700.1 | Wheat | nucleus | 22.78 | 23.66 |
| TraesCS4B01G070800.1 | Wheat | nucleus | 22.42 | 23.51 |
| TraesCS4B01G236900.1 | Wheat | nucleus | 24.56 | 22.26 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR013083 |
| PFAM:PF01485 | PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF219 | SMART:SM00647 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:TraesCS5B01G297300 | EnsemblPlants:TraesCS5B01G297300.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
No Description!
Coordinates
chr5B:+:480156536..480163571
Molecular Weight (calculated)
63503.3 Da
IEP (calculated)
5.383
GRAVY (calculated)
-0.651
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDDEPWGG SDSDPVAVGD YYYDCSDGGS GGAGGGGEEE EGSDCAGDDY EVREEVASMR EKRYIVLSEN DIHERQEEAI RRVSSIFSIP RESACILLRQ
101: YKWNISKLSD EWFADEERVR HFVGLPTNGA VLPDCQELTC GICFEGYSTT ALSSAGCVHL YCHECWEGYI SASINDGPGC LSLRCPEPSC TAMVLEETIN
201: RLAKDEEKVK YKQFLSCSYV EDNKKIKWCP APDCTRAVEF LGDENYDVSC MCKFSFCWNC TEETHRPVSC ETVSKWILKN SAESENVNWI IANSKPCPKC
301: KRPIEKNHGC MHMTCRPPCK FQFCWLCLGD WSEHGSRTTG GNYACNRYEA DKKKGIYDEA EAQRERAKNS LVRYTHYFER WASNQKSRQK AQGDLQKFES
401: ELAKLSDILG IPESQLKFIP EAWSQIVECR QVLQWTYAYG YYLDDKAKND FFVYLQGEAE SGLERLHKCA EKDIHAILPK AGETEPLPSL QDFNEFRVKL
501: AGLTSVTRNY FENLVQALEA GLEDVRVTGG QSTSKKKART ASKRKPSAKG KAGRNKKARI TS
101: YKWNISKLSD EWFADEERVR HFVGLPTNGA VLPDCQELTC GICFEGYSTT ALSSAGCVHL YCHECWEGYI SASINDGPGC LSLRCPEPSC TAMVLEETIN
201: RLAKDEEKVK YKQFLSCSYV EDNKKIKWCP APDCTRAVEF LGDENYDVSC MCKFSFCWNC TEETHRPVSC ETVSKWILKN SAESENVNWI IANSKPCPKC
301: KRPIEKNHGC MHMTCRPPCK FQFCWLCLGD WSEHGSRTTG GNYACNRYEA DKKKGIYDEA EAQRERAKNS LVRYTHYFER WASNQKSRQK AQGDLQKFES
401: ELAKLSDILG IPESQLKFIP EAWSQIVECR QVLQWTYAYG YYLDDKAKND FFVYLQGEAE SGLERLHKCA EKDIHAILPK AGETEPLPSL QDFNEFRVKL
501: AGLTSVTRNY FENLVQALEA GLEDVRVTGG QSTSKKKART ASKRKPSAKG KAGRNKKARI TS
001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
Arabidopsis Description
ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.