Factsheet for TraesCS4B01G071700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G070400.1	Wheat	nucleus	92.24	93.45
TraesCS4B01G071800.1	Wheat	nucleus	60.07	59.2
Os03t0625933-00	Rice	nucleus	34.38	56.53
TraesCS4B01G070800.1	Wheat	nucleus	55.27	55.78
EER93787	Sorghum	nucleus	54.16	54.77
AT3G27710.1	Thale cress	nucleus	41.4	41.71
PGSC0003DMT400043486	Potato	cytosol	39.74	41.27
Solyc04g079780.2.1	Tomato	cytosol	39.56	41.0
Bra039068.1-P	Field mustard	nucleus	39.56	40.84
VIT_18s0001g11740.t01	Wine grape	cytosol	41.77	40.72
CDY00148	Canola	nucleus	36.41	40.7
CDX71262	Canola	nucleus	43.62	40.62
CDY20037	Canola	nucleus	39.19	40.46
CDY49768	Canola	nucleus	35.86	40.42
CDY03991	Canola	nucleus	36.04	40.29
VIT_03s0063g02000.t01	Wine grape	nucleus	43.62	40.07
CDY49559	Canola	nucleus	43.07	40.03
Bra001960.1-P	Field mustard	nucleus	43.07	40.03
Solyc01g109280.2.1	Tomato	nucleus	43.62	40.0
PGSC0003DMT400064832	Potato	nucleus	43.62	40.0
Solyc12g089000.1.1	Tomato	nucleus	39.19	39.48
AT2G16090.1	Thale cress	nucleus	43.25	39.46
PGSC0003DMT400039948	Potato	nucleus	39.56	39.41
Bra033024.1-P	Field mustard	nucleus	38.08	39.16
GSMUA_Achr5P01850_001	Banana	nucleus	38.82	38.96
KRH29521	Soybean	nucleus	41.22	38.45
CDX75425	Canola	nucleus	41.96	38.41
Bra011524.1-P	Field mustard	nucleus	41.96	38.41
TraesCS4B01G236900.1	Wheat	nucleus	43.99	38.39
KRH24517	Soybean	nucleus	41.04	38.28
AT4G34370.1	Thale cress	nucleus	42.14	38.19
AT3G27720.1	Thale cress	nucleus	34.75	38.13
CDX69049	Canola	nucleus	41.96	38.02
TraesCS5B01G297300.1	Wheat	nucleus	23.66	22.78
TraesCS7B01G165100.2	Wheat	nucleus	24.95	22.35
TraesCS6B01G245900.2	Wheat	nucleus	23.84	21.98
TraesCS2B01G368000.2	Wheat	nucleus	23.66	21.73
TraesCS6B01G472300.1	Wheat	nucleus	22.18	21.16
TraesCS5B01G364000.1	Wheat	nucleus	22.55	20.5

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	ncoils:Coil	InterPro:E3_UB_ligase_RBR	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS4B01G071700	EnsemblPlants:TraesCS4B01G071700.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:66172117..66178676

Molecular Weight (calculated)

61646.8 Da

IEP (calculated)

5.042

GRAVY (calculated)

-0.522

Length

541 amino acids

Sequence
(BLAST)

001: MASDDECYDY EYDYDEDDDD EQEEEAMEAD EEGLFEDDTP MPDRPADCWA ITQESLSIAQ QQDLSMVMTL LNVKQHNARA LLIHHRWKID CIYDHLDRKG
101: RDRTFREAGI VLHENINGKP LGLPSRVVNC MVCFDEFSVG AVSTMECGHY FCNDCWTEHF KACVESGKKQ IRCMGVKCPV VCDEAVVQQL LAGEYPDAAR
201: RFDRFLLESY LENNDSVKWC PSVPHCGRAI RVGAGERYTE VECPCGLGFC FACAAGAHSP CPCTMWDMWE VKCNGESETV NWILANTKSC PKCFNPIVKD
301: GGCNLVTCKC GQHLCWKCGG ATGRAHDWDS IVGHSCNRFV GEEKKKVDNA KRNLHRYTHY YDRFKIHGDS HKLEHDKLGP AVDERVKLLE ALLQDQPLLH
401: DASWLTEAHR GLLQSRQVLS RSYVFAYYMF GGDDDKVRTW PKHRGSLPIA QGLFENYQEE LESNVERLSK LLATEYGPVP EEEDVRRDKQ NAMNLAKIVQ
501: TRCGEIYKCI QDELLPLLLD PMIIAAYRPR GPDKAKDFTT A

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.