Factsheet for Solyc12g089000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039948	Potato	nucleus	94.79	93.74
Solyc04g079780.2.1	Tomato	cytosol	64.99	66.86
VIT_18s0001g11740.t01	Wine grape	cytosol	57.91	56.04
Solyc01g109280.2.1	Tomato	nucleus	57.54	52.37
Bra001960.1-P	Field mustard	nucleus	55.87	51.55
CDY49559	Canola	nucleus	55.87	51.55
CDX71262	Canola	nucleus	55.31	51.12
CDY49768	Canola	nucleus	45.62	51.04
AT2G16090.1	Thale cress	nucleus	55.68	50.42
CDY03991	Canola	nucleus	45.25	50.21
Bra039068.1-P	Field mustard	nucleus	48.6	49.81
CDY00148	Canola	nucleus	44.88	49.79
CDY20037	Canola	nucleus	48.42	49.62
Bra033024.1-P	Field mustard	nucleus	48.42	49.43
AT4G34370.1	Thale cress	nucleus	54.38	48.91
CDX75425	Canola	nucleus	53.07	48.22
Bra011524.1-P	Field mustard	nucleus	53.07	48.22
AT3G27710.1	Thale cress	nucleus	47.86	47.86
EER92613	Sorghum	nucleus	53.82	47.85
CDX69049	Canola	nucleus	53.07	47.74
GSMUA_Achr5P01850_001	Banana	nucleus	47.3	47.12
Os03t0233500-01	Rice	nucleus	53.45	46.9
HORVU4Hr1G066180.1	Barley	nucleus	53.82	46.61
TraesCS4B01G236900.1	Wheat	nucleus	53.45	46.29
TraesCS4A01G061500.1	Wheat	nucleus	53.45	46.29
TraesCS4D01G238400.2	Wheat	nucleus	53.45	46.29
GSMUA_Achr6P23120_001	Banana	nucleus	55.31	46.19
Zm00001d028285_P003	Maize	nucleus	52.89	45.81
AT3G27720.1	Thale cress	nucleus	41.15	44.83
EER93790	Sorghum	nucleus	40.6	40.22
Os03t0625800-01	Rice	cytosol	40.04	39.81
Os03t0625933-00	Rice	nucleus	24.21	39.51
Zm00001d013716_P002	Maize	nucleus	39.29	39.51
TraesCS4D01G070400.1	Wheat	nucleus	39.29	39.51
TraesCS4A01G243200.1	Wheat	nucleus	40.04	39.23
TraesCS4B01G071700.1	Wheat	nucleus	39.48	39.19
HORVU1Hr1G018020.1	Barley	cytosol	13.41	39.13
TraesCS4D01G070600.1	Wheat	nucleus	38.92	38.85
TraesCS4B01G071800.1	Wheat	nucleus	39.66	38.8
EER93787	Sorghum	nucleus	38.17	38.32
Zm00001d048017_P003	Maize	nucleus	53.26	37.39
TraesCS4D01G069600.1	Wheat	nucleus	37.06	37.27
TraesCS4B01G070800.1	Wheat	nucleus	36.87	36.94
TraesCS4A01G244200.1	Wheat	nucleus	36.87	36.94
HORVU4Hr1G011770.1	Barley	nucleus	36.87	36.87
HORVU4Hr1G011910.1	Barley	cytosol, plastid	40.04	35.13
HORVU7Hr1G068450.2	Barley	nucleus	16.01	33.59
Os03t0626100-01	Rice	nucleus	35.38	33.33
Solyc06g073340.2.1	Tomato	nucleus	27.93	27.27
Solyc11g008580.1.1	Tomato	nucleus	25.7	23.35
Solyc01g005650.1.1	Tomato	nucleus	21.79	22.41
Solyc01g044340.2.1	Tomato	cytosol	3.54	13.87
Solyc01g044350.2.1	Tomato	mitochondrion	0.37	0.67

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0000151	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624
GO:GO:0032436	GO:GO:0042787	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4DGX1	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150
SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc12g089000.1	EnsemblPlants:Solyc12g089000.1.1	UniParc:UPI00027695C5	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:64171058..64175244

Molecular Weight (calculated)

61939.2 Da

IEP (calculated)

4.771

GRAVY (calculated)

-0.533

Length

537 amino acids

Sequence
(BLAST)

001: MEDYSYGSSD DDEWDNQQCN NDDEDDDDGE FLDGFTEIEQ ERNGISGKGP SCKVIRKETL LAAQKEDLQR VMDLLSLKEH HARSLLIHYR WEVDKVFAVL
101: VERGTEMLYA EAGVTLEGKE EHTSTLSTSE VTCQICFEDA PVEKTTVMDC NHIFCNECWT THFIVKINEG QSKQVTCMAQ KCNVICDEGK IRDLVTARDP
201: ALAEKFDRFL LESYIDDNKR VKWCPSVPHC GNAIRIEDDD YCCEVECACG VQFCFNCLSE AHSPCSCLMW KLWMKKCKND GKTVTWISEN AKHCPNCHNA
301: VEKNGGCNLV RCRCGQPFCW LCGGATGLDH TWSSIRGHTC GIYKEGEEDK STTVRNDLLR YTHYYERYMV HRDSLEAEAN MKQKLKFEVL KLEARELLSK
401: DFSWVENGCN RLLELRRILS CSYPVSFYVF DQTLFKDEMT QKDREIKKNL FENLQQQLEI NVERLSMFLE EPFAKYPEDK LLETRTKIIT LSVLTDNLCK
501: ELYDCIDNDL LLPLQQANHT IAHYRSEGVA KASELPN

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.