Factsheet for HORVU4Hr1G011910.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G243200.1	Wheat	nucleus	84.15	93.98
TraesCS4D01G070600.1	Wheat	nucleus	81.86	93.12
TraesCS4B01G071800.1	Wheat	nucleus	83.5	93.08
Os03t0625800-01	Rice	cytosol	58.82	66.67
Zm00001d013716_P002	Maize	nucleus	57.19	65.54
EER93790	Sorghum	nucleus	57.35	64.76
HORVU4Hr1G011770.1	Barley	nucleus	48.69	55.49
CDX71262	Canola	nucleus	39.38	41.48
Bra001960.1-P	Field mustard	nucleus	39.38	41.41
CDY49559	Canola	nucleus	39.38	41.41
GSMUA_Achr5P01850_001	Banana	nucleus	36.27	41.19
AT3G27710.1	Thale cress	nucleus	36.11	41.15
Solyc04g079780.2.1	Tomato	cytosol	34.48	40.42
PGSC0003DMT400043486	Potato	cytosol	34.31	40.31
VIT_18s0001g11740.t01	Wine grape	cytosol	36.44	40.18
CDX75425	Canola	nucleus	38.73	40.1
Bra011524.1-P	Field mustard	nucleus	38.73	40.1
Solyc12g089000.1.1	Tomato	nucleus	35.13	40.04
Solyc01g109280.2.1	Tomato	nucleus	38.56	40.0
PGSC0003DMT400064832	Potato	nucleus	38.56	40.0
HORVU4Hr1G066180.1	Barley	nucleus	40.36	39.84
CDY49768	Canola	nucleus	31.21	39.79
PGSC0003DMT400039948	Potato	nucleus	35.29	39.78
CDX69049	Canola	nucleus	38.73	39.7
AT2G16090.1	Thale cress	nucleus	38.24	39.46
VIT_03s0063g02000.t01	Wine grape	nucleus	37.91	39.39
Bra039068.1-P	Field mustard	nucleus	33.66	39.31
KRH24517	Soybean	nucleus	37.09	39.14
CDY00148	Canola	nucleus	30.88	39.05
CDY03991	Canola	nucleus	30.88	39.05
KRH29521	Soybean	nucleus	36.93	38.97
CDY20037	Canola	nucleus	33.33	38.93
AT4G34370.1	Thale cress	nucleus	37.91	38.86
Bra033024.1-P	Field mustard	nucleus	33.33	38.78
AT3G27720.1	Thale cress	nucleus	28.59	35.5
HORVU1Hr1G018020.1	Barley	cytosol	9.64	32.07
HORVU7Hr1G056020.3	Barley	cytosol	13.07	28.37
HORVU7Hr1G068450.2	Barley	nucleus	10.95	26.17
HORVU3Hr1G019640.1	Barley	cytosol, peroxisome, plastid	8.66	24.88
HORVU3Hr1G049680.1	Barley	nucleus	14.71	24.79
HORVU5Hr1G078470.2	Barley	nucleus	21.57	23.66
HORVU6Hr1G055260.4	Barley	nucleus	21.9	22.75
HORVU7Hr1G056040.5	Barley	nucleus, plastid	22.55	20.78
HORVU5Hr1G089020.2	Barley	nucleus	19.77	19.97
HORVU5Hr1G089940.1	Barley	cytosol	10.78	19.82
HORVU2Hr1G085060.3	Barley	cytosol	19.77	18.09

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	UniProt:A0A287N8D8	ncoils:Coil	InterPro:E3_UB_ligase_RBR
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:HORVU4Hr1G011910	EnsemblPlants:HORVU4Hr1G011910.1	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000B471203
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287N8D8]

Coordinates

chrchr4H:-:37742072..37745747

Molecular Weight (calculated)

69514.5 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.548

Length

612 amino acids

Sequence
(BLAST)

001: SAFCPPEEKH PPLNPSGLCA AVDSSRLPAK NPRPNCRAFL LPEAFPEKPS PPFPQPRPRS TPATAMASDD DDCYYYCDDD GDGDGEADEE AADWNGLAVG
101: ADEDDLGLLE EEPPPPERRV DCWAITGDTL SAAQQEDLSI VMNLLNIKQH QARSLFIFHR WKIDCIYDCL DRKGRDRMLR EAGIVLQEKN SMLIGASRTP
201: STSVQCNVCF DDDLSPAAVS TMDCGHCFCN DCWTEHFNAA IDGGKKQIRC MEVKCLAICD EGIVQRLLGQ KYPDAAKRFN RFLLESYLED NDFVKWCPSI
301: PHCGRAIRVG TGDRYCEVKC LCGVSFCFNC TEQTHSPCPC TIWKKWNTRI HGESENIKWI VKNTKSCPKC FKPIEKRDGC NLVKCKCGQY LCWLCGGPTG
401: RAHTWTNIEG HSCNRYKESK DKVDTGRWQL ERYAHYCNRF KIHEDSYKEQ HEKLGPAIKE KVKQLESNHL RPRLIRDGDW LTDAHQRLLW SRQVVSRSYA
501: FAYHMFGGEL RAHRSERGNL VPAQNLFENQ QEQLEQHVEQ LSKVLVTDIP ALPDQEIVQV KQDVVNLAKI LERLCGEMYT CIQDELLPLL TVPMDIAAYT
601: PDGPVRAKVF RA

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.