Factsheet for HORVU5Hr1G089940.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G049680.1	Barley	nucleus	64.56	59.23
TraesCS5A01G361400.1	Wheat	nucleus	83.48	47.04
TraesCS5D01G370300.1	Wheat	nucleus	83.78	46.89
TraesCS5B01G364000.1	Wheat	nucleus	82.88	46.39
HORVU5Hr1G089020.2	Barley	nucleus	84.08	46.2
Os09t0559000-00	Rice	cytosol	46.55	29.52
HORVU7Hr1G056020.3	Barley	cytosol	24.92	29.43
HORVU5Hr1G078470.2	Barley	nucleus	42.34	25.27
KXG36175	Sorghum	nucleus	41.44	25.09
EES08942	Sorghum	cytosol	41.74	25.09
HORVU6Hr1G055260.4	Barley	nucleus	42.94	24.28
Zm00001d048683_P001	Maize	nucleus	42.34	24.1
OQU83976	Sorghum	cytosol	38.44	24.02
OQU83975	Sorghum	nucleus	40.54	22.61
EES08939	Sorghum	nucleus	43.84	22.22
HORVU7Hr1G056040.5	Barley	nucleus, plastid	43.54	21.84
HORVU2Hr1G085060.3	Barley	cytosol	43.54	21.67
Zm00001d007709_P003	Maize	nucleus	47.45	15.35
HORVU1Hr1G018020.1	Barley	cytosol	8.41	15.22
EES08947	Sorghum	nucleus	47.15	14.47
HORVU4Hr1G011770.1	Barley	nucleus	21.92	13.59
HORVU3Hr1G019640.1	Barley	cytosol, peroxisome, plastid	8.41	13.15
HORVU4Hr1G066180.1	Barley	nucleus	22.22	11.94
HORVU7Hr1G068450.2	Barley	nucleus	9.01	11.72
HORVU4Hr1G011910.1	Barley	cytosol, plastid	19.82	10.78
Os09t0559100-00	Rice	nucleus	2.1	3.55

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	UniProt:A0A287S7F9	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU5Hr1G089940	EnsemblPlants:HORVU5Hr1G089940.1
InterPro:IBR_dom	PFAM:PF01485	ScanProsite:PS00518	PANTHER:PTHR11685	PANTHER:PTHR11685:SF216	SUPFAM:SSF57850
UniParc:UPI000B4702B7	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287S7F9]

Coordinates

chrchr5H:+:585680970..585682164

Molecular Weight (calculated)

38294.0 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.689

Length

333 amino acids

Sequence
(BLAST)

001: PLVCQPRRLQ EQEQQLHAGT GERLLLLLLH SYLATCGEEA HRPVSCDTVR VWMEKNRSDS ETAQWVLANT KHCPECRRPI EKNHGCMHMT CSPPCKHQFC
101: WLCLGPWEKH DSGNFYNCNR YNEARAEGNY TEEELRRSQA KASVDRYLHY YERWAAHERS RQKALEDVAA LGKDGSQREA VAAAFGVVET ELDFLEEAFR
201: QVAECRRMLR WTYAFGYYLD DAAKRDLFED LQSQADKSLE LLHECAEKDR KDLVAEAAGV RGAVADKYLE FRPKLSSLTA VARNHFENMA RAFRDGLAEV
301: EVDPAVAARR AAAVPPPLPK DDDDYHRFDD LRM

Best Arabidopsis Sequence Match ( AT1G05890.1 )
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN

Arabidopsis Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.