Factsheet for HORVU4Hr1G066180.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G236900.1	Wheat	nucleus	98.55	98.55
TraesCS4D01G238400.2	Wheat	nucleus	98.23	98.23
TraesCS4A01G061500.1	Wheat	nucleus	97.9	97.9
HORVU7Hr1G068450.2	Barley	nucleus	39.35	95.31
Os03t0233500-01	Rice	nucleus	90.0	91.18
EER92613	Sorghum	nucleus	85.81	88.08
Zm00001d028285_P003	Maize	nucleus	84.68	84.68
HORVU1Hr1G018020.1	Barley	cytosol	24.03	80.98
GSMUA_Achr6P23120_001	Banana	nucleus	74.35	71.7
Zm00001d048017_P003	Maize	nucleus	82.58	66.93
KRH24517	Soybean	nucleus	59.35	63.45
KRH29521	Soybean	nucleus	59.19	63.28
PGSC0003DMT400064832	Potato	nucleus	60.0	63.05
VIT_03s0063g02000.t01	Wine grape	nucleus	59.68	62.82
Solyc01g109280.2.1	Tomato	nucleus	59.52	62.54
CDY49559	Canola	nucleus	58.06	61.86
Bra001960.1-P	Field mustard	nucleus	58.06	61.86
AT2G16090.1	Thale cress	nucleus	58.71	61.38
CDX71262	Canola	nucleus	57.26	61.1
VIT_18s0001g11740.t01	Wine grape	cytosol	52.9	59.1
Bra011524.1-P	Field mustard	nucleus	56.29	59.05
CDX75425	Canola	nucleus	56.29	59.05
CDX69049	Canola	nucleus	56.29	58.46
AT4G34370.1	Thale cress	nucleus	55.97	58.12
PGSC0003DMT400043486	Potato	cytosol	48.06	57.2
Solyc04g079780.2.1	Tomato	cytosol	47.58	56.51
AT3G27710.1	Thale cress	nucleus	47.42	54.75
PGSC0003DMT400039948	Potato	nucleus	47.58	54.33
Solyc12g089000.1.1	Tomato	nucleus	46.61	53.82
CDY49768	Canola	nucleus	41.13	53.12
CDY03991	Canola	nucleus	40.97	52.48
Bra039068.1-P	Field mustard	nucleus	43.71	51.72
AT3G27720.1	Thale cress	nucleus	40.97	51.52
CDY20037	Canola	nucleus	43.23	51.15
Bra033024.1-P	Field mustard	nucleus	43.39	51.14
CDY00148	Canola	nucleus	39.68	50.83
HORVU4Hr1G011770.1	Barley	nucleus	35.16	40.6
HORVU4Hr1G011910.1	Barley	cytosol, plastid	39.84	40.36
HORVU7Hr1G056020.3	Barley	cytosol	13.39	29.43
HORVU6Hr1G055260.4	Barley	nucleus	25.32	26.66
HORVU3Hr1G019640.1	Barley	cytosol, peroxisome, plastid	9.03	26.29
HORVU3Hr1G049680.1	Barley	nucleus	15.32	26.17
HORVU5Hr1G078470.2	Barley	nucleus	21.77	24.19
HORVU7Hr1G056040.5	Barley	nucleus, plastid	24.84	23.19
HORVU5Hr1G089940.1	Barley	cytosol	11.94	22.22
HORVU2Hr1G085060.3	Barley	cytosol	23.39	21.67
HORVU5Hr1G089020.2	Barley	nucleus	20.97	21.45

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	UniProt:A0A287PEK2	InterPro:E3_UB_ligase_RBR	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU4Hr1G066180
EnsemblPlants:HORVU4Hr1G066180.1	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485	PFscan:PS50089
PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000B467412	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287PEK2]

Coordinates

chrchr4H:+:551354062..551359371

Molecular Weight (calculated)

70831.8 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.674

Length

620 amino acids

Sequence
(BLAST)

001: MGSDAEEVSQ PASSPEYEQD DDDDDCYLSD QEDDALEESV LQVLEDGNLE DCHWSSSSVI TKEYLLAAQR EDLRKVMDLL GLKEHHARTL LIHYRWDVER
101: IFELLDQKGR DRLFSEAGIP LGTANNAGSP SATEVTCNVC YDDVPLSSAS HMDCGHNYCN ECWTEYFIVK INEGQSRRVK CMAPKCNAIC DEALVRKLVS
201: AKRPDIAERF ERFLLESYIE DNDTVKWCPS TPHCGNAIRV KGDIHCEVEC TCGRQFCFNC SSEAHSPCSC VMWELWIKKC RDESETVNWI TVNTKPCPKC
301: HKPVEKNGGC NLVACICGQA FCWLCGGATG RDHTWSSISG HSCGRFTEDQ STRTEQARRD LYRYMHYHNR YKAHTDSLKQ EAKLKRDIQW KISISENKDS
401: KIKDYSWVIN GLNRLFRSRR VLSYSYPFAF YMFGDEIFKD EMTPEERELK QNLFEDQQQQ LEFNVERLSG FLEKDFQNFS DEEVMDTMKH VINLSNVVDR
501: LCKQMYQCIE NDLLYPLRTP HNIAPYKSKG LDRASELHIS LDSAEQSSPS MKCSQDEHKS QPGLCSESGS SLTGKRPILQ LHGSSSDNSG RPSHKRERRD
601: AHGGGALFDL NVPAEVADKI

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.