Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT3G27710.1 | Thale cress | nucleus | 74.64 | 68.53 |
CDY49768 | Canola | nucleus | 53.96 | 55.42 |
CDY03991 | Canola | nucleus | 53.96 | 54.96 |
CDY00148 | Canola | nucleus | 53.96 | 54.96 |
Bra033024.1-P | Field mustard | nucleus | 55.17 | 51.71 |
CDY20037 | Canola | nucleus | 53.96 | 50.76 |
Bra039068.1-P | Field mustard | nucleus | 53.75 | 50.57 |
HORVU1Hr1G018020.1 | Barley | cytosol | 17.85 | 47.83 |
AT4G34370.1 | Thale cress | nucleus | 57.2 | 47.24 |
AT2G16090.1 | Thale cress | nucleus | 55.78 | 46.37 |
KRH24517 | Soybean | nucleus | 53.75 | 45.69 |
KRH29521 | Soybean | nucleus | 53.35 | 45.34 |
VIT_03s0063g02000.t01 | Wine grape | nucleus | 53.75 | 44.99 |
Solyc04g079780.2.1 | Tomato | cytosol | 46.45 | 43.87 |
PGSC0003DMT400043486 | Potato | cytosol | 46.04 | 43.57 |
Solyc01g109280.2.1 | Tomato | nucleus | 52.13 | 43.56 |
PGSC0003DMT400064832 | Potato | nucleus | 51.93 | 43.39 |
VIT_18s0001g11740.t01 | Wine grape | cytosol | 48.48 | 43.06 |
EER92613 | Sorghum | nucleus | 50.51 | 41.23 |
Solyc12g089000.1.1 | Tomato | nucleus | 44.83 | 41.15 |
TraesCS4A01G061500.1 | Wheat | nucleus | 51.72 | 41.13 |
HORVU7Hr1G068450.2 | Barley | nucleus | 21.3 | 41.02 |
TraesCS4D01G238400.2 | Wheat | nucleus | 51.52 | 40.97 |
HORVU4Hr1G066180.1 | Barley | nucleus | 51.52 | 40.97 |
TraesCS4B01G236900.1 | Wheat | nucleus | 51.32 | 40.81 |
PGSC0003DMT400039948 | Potato | nucleus | 44.83 | 40.7 |
Os03t0233500-01 | Rice | nucleus | 50.51 | 40.69 |
GSMUA_Achr6P23120_001 | Banana | nucleus | 52.94 | 40.59 |
Zm00001d028285_P003 | Maize | nucleus | 50.3 | 40.0 |
GSMUA_Achr5P01850_001 | Banana | nucleus | 41.78 | 38.22 |
TraesCS4D01G070400.1 | Wheat | nucleus | 38.13 | 35.21 |
TraesCS4B01G071700.1 | Wheat | nucleus | 38.13 | 34.75 |
EER93790 | Sorghum | nucleus | 35.9 | 32.66 |
Zm00001d048017_P003 | Maize | nucleus | 50.51 | 32.55 |
TraesCS4D01G070600.1 | Wheat | nucleus | 35.5 | 32.53 |
TraesCS4A01G243200.1 | Wheat | nucleus | 36.11 | 32.48 |
TraesCS4B01G071800.1 | Wheat | nucleus | 35.7 | 32.06 |
Zm00001d013716_P002 | Maize | nucleus | 34.48 | 31.84 |
Os03t0625800-01 | Rice | cytosol | 34.48 | 31.48 |
TraesCS4D01G069600.1 | Wheat | nucleus | 33.87 | 31.27 |
TraesCS4A01G244200.1 | Wheat | nucleus | 33.67 | 30.97 |
TraesCS4B01G070800.1 | Wheat | nucleus | 33.47 | 30.78 |
EER93787 | Sorghum | nucleus | 32.86 | 30.28 |
HORVU4Hr1G011770.1 | Barley | nucleus | 32.45 | 29.8 |
HORVU4Hr1G011910.1 | Barley | cytosol, plastid | 35.5 | 28.59 |
Os03t0626100-01 | Rice | nucleus | 32.25 | 27.89 |
Os03t0625933-00 | Rice | nucleus | 16.43 | 24.62 |
AT2G31760.1 | Thale cress | nucleus | 23.94 | 22.96 |
AT2G31770.1 | Thale cress | nucleus | 24.14 | 21.92 |
AT2G31780.1 | Thale cress | nucleus | 19.68 | 21.9 |
AT1G05890.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 26.17 | 21.72 |
AT2G31510.1 | Thale cress | nucleus | 24.75 | 21.71 |
AT1G65430.1 | Thale cress | nucleus | 23.73 | 20.63 |
AT1G05880.2 | Thale cress | cytosol | 17.04 | 16.94 |
AT5G08730.1 | Thale cress | cytosol | 16.02 | 15.8 |
AT5G63750.1 | Thale cress | nucleus | 15.82 | 14.55 |
AT5G63760.2 | Thale cress | nucleus | 13.18 | 14.38 |
AT5G63730.1 | Thale cress | cytosol | 14.4 | 14.03 |
Protein Annotations
Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Symbol:ARI4 | ArrayExpress:AT3G27720 | EnsemblPlantsGene:AT3G27720 | RefSeq:AT3G27720 |
TAIR:AT3G27720 | RefSeq:AT3G27720-TAIR-G | EnsemblPlants:AT3G27720.1 | TAIR:AT3G27720.1 | Unigene:At.53522 | ncoils:Coil |
InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
GO:GO:0046872 | InterPro:IBR_dom | PFAM:PF01485 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF150 | SMART:SM00647 |
SUPFAM:SSF57850 | UniParc:UPI0000163582 | SEG:seg | : | : | : |
Description
ARI4IBR domain containing protein [Source:TAIR;Acc:AT3G27720]
Coordinates
chr3:+:10271876..10273621
Molecular Weight (calculated)
57367.1 Da
IEP (calculated)
4.224
GRAVY (calculated)
-0.904
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDEYMSLEE EEDNCYPSEF DDHDQMCSNA EESDLQHSRE PTSQVMEFLS VTENQARTLL IQYQWNVDKL FSVYTDQGKD VLFSRAEEEE GEDKEEEEGG
101: EDEEEEEGGE DEEAEEGGED EEAEEGVEDE EEEEDEKDDE VQLVSTELAE KFDRFLIESY VEDNNMVKWC PSTPHCGNAI RNIKDDGDVD EVECSCGLQF
201: CFSCLSESHS PCSCLMWKLW KKKCEDESET VNWMTVNTKL CPKCSKPIQK RDGCNHMTCK CGQHFCWLCG QATGRDHSYS SIAGHSCGRY KEEKVRQLER
301: AQRDLDRYTH YHYRYKAHID SLKLEDKLKK SILKKAVLNS ETKDQKVFKE YSWIIDAVNR LFRSRRILSY SYPFVFYMFG KELFKDDMSD EERNIKKNLF
401: EDQQQQLEGN VERLSKILEE PFDEYDHEKV VEMMRHLTNL TAVVDNLCKE MYECIENELL GPLISGIHNI APYRSKGIEQ AAEFSASSAC GSS
101: EDEEEEEGGE DEEAEEGGED EEAEEGVEDE EEEEDEKDDE VQLVSTELAE KFDRFLIESY VEDNNMVKWC PSTPHCGNAI RNIKDDGDVD EVECSCGLQF
201: CFSCLSESHS PCSCLMWKLW KKKCEDESET VNWMTVNTKL CPKCSKPIQK RDGCNHMTCK CGQHFCWLCG QATGRDHSYS SIAGHSCGRY KEEKVRQLER
301: AQRDLDRYTH YHYRYKAHID SLKLEDKLKK SILKKAVLNS ETKDQKVFKE YSWIIDAVNR LFRSRRILSY SYPFVFYMFG KELFKDDMSD EERNIKKNLF
401: EDQQQQLEGN VERLSKILEE PFDEYDHEKV VEMMRHLTNL TAVVDNLCKE MYECIENELL GPLISGIHNI APYRSKGIEQ AAEFSASSAC GSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.